Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000802-TA|BGIBMGA000802-PA|IPR003191|Guanylate-binding
protein
         (528 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              27   0.51 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              27   0.51 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   3.6  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 270 LADISPEFKDSLKQLLPMLLAPENLVPKLI-EGQKVKAKDLLLYFKTYMKVF 320
           + D S  FK+++ Q L  +   EN++ KL+ E   +   ++ + F   +K F
Sbjct: 72  IVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCF 123


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 270 LADISPEFKDSLKQLLPMLLAPENLVPKLI-EGQKVKAKDLLLYFKTYMKVF 320
           + D S  FK+++ Q L  +   EN++ KL+ E   +   ++ + F   +K F
Sbjct: 72  IVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCF 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 53  GAFRKGKSFLLDFFLRYLQHKYVLGES 79
           GA R   S LLD   ++L HK  LG S
Sbjct: 487 GAGRDSDSRLLDLCTKFLMHKDSLGLS 513


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 69  YLQHKYVLGESGGEWIGVEDEPLEGFKWR 97
           + +H+ V  ++ G+W+   D  LE F  R
Sbjct: 280 HYEHQNVFVKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,605
Number of Sequences: 429
Number of extensions: 5356
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 4
length of query: 528
length of database: 140,377
effective HSP length: 61
effective length of query: 467
effective length of database: 114,208
effective search space: 53335136
effective search space used: 53335136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)