GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000802-TA|BGIBMGA000802-PA|IPR003191|Guanylate-binding
protein
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    29   1.6  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 128 LMDTQGTFDSQSTVRDNATVFALSTLISSV-QIYNLSQNIEEDDLQHLQLFTDYGQLAQE 186
           L+D +GT  S S V+D    +A S   S V + Y   +N+ E      +   +  +L  E
Sbjct: 6   LLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKLHAE 65

Query: 187 SSSGRPFQRLQFLVRDWSFPYD 208
            S  R F+ +Q   R W   Y+
Sbjct: 66  GSKERSFKMVQ--GRIWKKGYE 85


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,514
Number of Sequences: 5004
Number of extensions: 82084
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 1
length of query: 528
length of database: 2,362,478
effective HSP length: 76
effective length of query: 452
effective length of database: 1,982,174
effective search space: 895942648
effective search space used: 895942648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)