Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000802-TA|BGIBMGA000802-PA|IPR003191|Guanylate-binding
protein
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 68 2e-11
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 58 1e-08
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 58 2e-08
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 31 3.0
03_05_0501 - 24944533-24945507 30 5.2
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 67.7 bits (158), Expect = 2e-11
Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDS--QSTVRDNATVFALSTLISSVQIYNLS 163
G+ +W P + + +G KV + +DT+G F+S +S V D+ +FAL+T++SSV IYNL
Sbjct: 90 GIWIWGTPVEMDI-DGSKVSVLYLDTEG-FESVGKSNVYDDR-IFALATVLSSVLIYNLP 146
Query: 164 QNIEEDDLQHLQLFTD-----YGQLAQESSSGRPFQRLQFLVRDWSFPYDHPYGAXXXXX 218
+ + E D+ L + YG++ + + P + L + RD+
Sbjct: 147 ETVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDF--------------- 191
Query: 219 XXXXXXXIHEGQHPELQNLREYVTRIFDEIACFLMPHPGLKVATNPDFNGKLAD-ISPEF 277
+ + E+ +R+ + + + F +P P L+ D + + D + +
Sbjct: 192 -------LRDKYIDEVNQIRDSLAVMGNNSTAFSLPQPHLQRTKLCDMDDRELDPLYVKR 244
Query: 278 KDSLKQLLPMLLAPENLVPKLIEGQKVKAKDLLLYFKTYMKVFNGTELPEPRTILAATSE 337
+D LKQ++ + PK+++G+ + K+ + + + ++ N E+P +++ E
Sbjct: 245 RDELKQVVASITR-----PKIVQGKTLNGKEFVSFLQQILEALNKGEIPSTGSLV----E 295
Query: 338 ANNLSAVAEAREVYETLMEEICGGTRPYVQPRQLEEEHHRVMNKAIHAFDSK 389
N + + +VY M+ G R V +L++ H +++A FD +
Sbjct: 296 IFNKAILDRCLKVYRDKMD----GLRLPVPVDRLQQVHETAIDQARMLFDKQ 343
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 58.4 bits (135), Expect = 1e-08
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 46 VVIISVAGAFRKGKSFLLDFFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWRGGSERETT 105
V ++SV G R+GKSF+L+ +LG S G + P T
Sbjct: 64 VGVVSVCGRARQGKSFVLN---------QLLGRSSGFQVAPTHRPC------------TK 102
Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDSQSTVRDNATVFALSTLISSVQIYNLSQN 165
GL +WS P K T +G + + L+DT+G T + +F+L+ L+SS+ IYN
Sbjct: 103 GLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSMFIYNQMGG 162
Query: 166 IEEDDLQHLQLFTDYGQLAQESSSG 190
I+E L L L T+ + + +SG
Sbjct: 163 IDEAALDRLSLVTEMTKHIRVRASG 187
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 57.6 bits (133), Expect = 2e-08
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 24/139 (17%)
Query: 46 VVIISVAGAFRKGKSFLLDFFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWRGGSERETT 105
+ ++V G +R GKSFLL+ L +K GF + +T
Sbjct: 65 IAAVAVIGPYRSGKSFLLNQLLSLTCNK-------------------GFGVGHMRDTKTK 105
Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDS--QSTVRDNATVFALSTLISSVQIYNLS 163
G+ +W P + + NG KV + +DT+G F+S +S V D+ +FAL+T++SS+ IYNL
Sbjct: 106 GIWVWGTPIELDV-NGSKVSVLYLDTEG-FESIGKSNVYDDR-IFALATVLSSILIYNLP 162
Query: 164 QNIEEDDLQHLQLFTDYGQ 182
+ I E D+ L + +
Sbjct: 163 ETIREADISRLSFAVEIAE 181
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 158 QIYNLSQNIEEDDLQ-HLQLFTDYGQLAQESSSGRPFQRLQ 197
Q + L Q +++ LQ H+QL T L Q+ S G P Q+ Q
Sbjct: 686 QQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQ 726
>03_05_0501 - 24944533-24945507
Length = 324
Score = 29.9 bits (64), Expect = 5.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 65 FFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWR--GGSER 102
FFL L + G +GG GV+++PLEGF+ R G ER
Sbjct: 136 FFL--LDEEEGCGVAGGVGFGVDEDPLEGFETRCPPGGER 173
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,690
Number of Sequences: 37544
Number of extensions: 536160
Number of successful extensions: 1057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 9
length of query: 528
length of database: 14,793,348
effective HSP length: 85
effective length of query: 443
effective length of database: 11,602,108
effective search space: 5139733844
effective search space used: 5139733844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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