GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000802-TA|BGIBMGA000802-PA|IPR003191|Guanylate-binding
protein
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                        372   e-103
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)                   65   1e-10
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)                    48   1e-05
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      46   8e-05
SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.3  
SB_6325| Best HMM Match : DUF1472 (HMM E-Value=2.5)                    31   3.0  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.0  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.3  
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.3  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score =  372 bits (916), Expect = e-103
 Identities = 187/440 (42%), Positives = 264/440 (60%), Gaps = 19/440 (4%)

Query: 78  ESGGEWIGVEDEPLEGFKWRGGSERETTGLLLWSQPFKATLANGEKVVIFLMDTQGTFDS 137
           +S  +W+G E E LEGF WRGGSER+TTG+L+W++P+     +GE+VV+ LMDTQG FDS
Sbjct: 1   DSCDDWLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDS 60

Query: 138 QSTVRDNATVFALSTLISSVQIYNLSQNI--EEDDLQHLQLFTDYGQLA----------- 184
            STV+D AT+FALST+ SS Q++     +  E ++++  Q+  +                
Sbjct: 61  SSTVKDCATIFALSTMTSSTQLFTEYGKLAMENNEIKPFQVNNEIKPFLLNNEIKPFQVN 120

Query: 185 ------QESSSGRPFQRLQFLVRDWSFPYDHPYGAXXXXXXXXXXXXIHEGQHPELQNLR 238
                 QE+   +PFQRL FLVRDWSFPY+  YG               E QH EL  +R
Sbjct: 121 NEIKPFQENKEIKPFQRLLFLVRDWSFPYEANYGEAGGSQILERRLKTTERQHSELLQVR 180

Query: 239 EYVTRIFDEIACFLMPHPGLKVATNPDFNGKLADISPEFKDSLKQLLPMLLAPENLVPKL 298
           +++   F++I CFLMPHPGL+VATNP F+G+L DI  EFK++L++L+P LLAPENL  K 
Sbjct: 181 KHIKECFEKIGCFLMPHPGLRVATNPTFDGRLVDIDDEFKENLRKLIPSLLAPENLELKG 240

Query: 299 IEGQKVKAKDLLLYFKTYMKVFNGTELPEPRTILAATSEANNLSAVAEAREVYETLMEEI 358
           I G++V  + LL YFK YMK+F G ELP+P+++L AT+EANNL+A+A A++ Y   ME +
Sbjct: 241 INGEEVTCRGLLEYFKAYMKIFQGDELPQPKSMLLATAEANNLAALATAKDTYSKAMESV 300

Query: 359 CGGTRPYVQPRQLEEEHHRVMNKAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRS 418
            GG  PY+ P +LE +H    + A+  F   +KMGGKE ++ Y                 
Sbjct: 301 VGGDMPYLSPNELERKHLETRDSALSHFHGTRKMGGKEFSEKYVEQLLKEIDETFENFVK 360

Query: 419 HNEAKNIYRMIGTPVVFATVAVLAYMLVVLGNMFXXXXXXXXXXXXXXXXLVMIAVWIYS 478
            N++KNI+    TP VF T+ VL+Y+L  + N                  L+ I VW Y 
Sbjct: 361 LNDSKNIFNAARTPAVFFTIVVLSYILSSVFNSIGILSFTRMCNLTIWMGLLGILVWSYI 420

Query: 479 RTTGQMRDVGAQLDEIADSI 498
           R +G+ R+ GA+LD +A+ I
Sbjct: 421 RFSGEFREFGAKLDHLAELI 440


>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
          Length = 368

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 21/138 (15%)

Query: 46  VVIISVAGAFRKGKSFLLDFFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWRGGSERETT 105
           +  ++V G F  GKSFLL+          ++G+  G  +G    P            ET 
Sbjct: 118 IATVAVVGKFHTGKSFLLN---------QLMGKQAGFGVGPFVRP------------ETM 156

Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDSQSTVRDNATVFALSTLISSVQIYNLSQN 165
           G+ +W +P K  L +G++V +  +DT+G   +  +   +A VFA++TL+SS  IYN  + 
Sbjct: 157 GIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNSVKI 216

Query: 166 IEEDDLQHLQLFTDYGQL 183
           I++ D+ +L+L +   QL
Sbjct: 217 IDQGDIDYLELLSRRTQL 234


>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
          Length = 621

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 21/129 (16%)

Query: 46  VVIISVAGAFRKGKSFLLDFFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWRGGSERETT 105
           V ++SV G  RKGKSF+L    +    K V        +G E +P            +T 
Sbjct: 148 VCVVSVTGPCRKGKSFIL---AKSFTEKEVFP------LGDELDP------------KTM 186

Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDSQSTVRDNATVFALSTLISSVQIYNLSQN 165
           GL LW  P +     G+   + L+D++GT  SQS  +++  +  L+ L+SSV IYN    
Sbjct: 187 GLWLWVVPKQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSSVLIYNSEGV 246

Query: 166 IEEDDLQHL 174
               DL+ L
Sbjct: 247 PTASDLEQL 255


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 21/116 (18%)

Query: 46  VVIISVAGAFRKGKSFLLDFFLRYLQHKYVLGESGGEWIGVEDEPLEGFKWRGGSERETT 105
           V ++S+AG  RKGKS++       +   + LGE               F      + ET 
Sbjct: 50  VCVVSIAGPCRKGKSYI-------ISKAFNLGEI--------------FPLGHLMDPETM 88

Query: 106 GLLLWSQPFKATLANGEKVVIFLMDTQGTFDSQSTVRDNATVFALSTLISSVQIYN 161
           G+ L+    K   ANG +V + L+D++G   + +   D+ +VF LS L+SSV IYN
Sbjct: 89  GIWLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSVMIYN 144


>SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 110 WSQPFKATLANGEKVVIFLMDTQGTFDSQSTV-RDNATVFALSTLISSVQIYNLSQNIEE 168
           W    +  L +G   VI + DT G+F  +  +   + +V++++     + +   +QNI  
Sbjct: 126 WCDETEEKLISGSHNVIHIWDTSGSFALRRKIDHTHGSVYSITVTKQFIIVGTYNQNIHV 185

Query: 169 DD---LQHLQ-LFTDYGQLAQESSSGR 191
            D   LQH++ L T +G +     SGR
Sbjct: 186 FDVNGLQHVKALTTHFGTVTGLVVSGR 212


>SB_6325| Best HMM Match : DUF1472 (HMM E-Value=2.5)
          Length = 376

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 255 HPGLKVATNPDFNGKLADISPEFKDSLK-QLLPMLLAPENLVPKLIEGQKVKAKDLLLYF 313
           H  L +A +  FNG L   S  F + L   L  +    +N     +EGQ V+A  +L + 
Sbjct: 242 HQLLHLADSVRFNGPLFSNSCFFYEDLNGDLRSLFHGSQN-----VEGQIVRAVSILQHL 296

Query: 314 KTYMKVFNGTELPEPRTILAATSEANNLSAVAEAREVYETLMEEICGGTRPYVQPRQLEE 373
              ++  N T+L   +    + ++   +  V+E  E+ E L  ++ G  +PY+     E 
Sbjct: 297 PEMIE--NVTDL-NVKHFCQSLTQKRRVGHVSE--EIDENLKLQVLGSLKPYIISALQEV 351

Query: 374 EHHRVMNKAIHAFD 387
           E  +++   +  FD
Sbjct: 352 EQLQIIAGNVAIFD 365


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 267 NGKLADISPEFKDSLKQLLPMLLAPENLVPKLIEGQKVKAKDLLLYF-KTYMKVFNGTEL 325
           N  ++DI  E K+   QL+       NL+  +IE       D+LL F K+  K+F+   L
Sbjct: 7   NKTISDIKREIKEKT-QLILETATNANLLVDVIELSDTDRSDVLLCFIKSVHKIFSKL-L 64

Query: 326 PEPRTILAATSEANNLSAVAEAREVYETLMEE 357
            E +      SE +N     +  +V+ T + +
Sbjct: 65  KENKLFANKKSETDNEETTEDPDDVFATWLND 96


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 312 YFKTYMKVFNGTELPEPRTILAATSEANNLSAVAEAREVYETLMEEIC-GGTRPYVQPRQ 370
           Y  T++KVF+G E P PR I+A  ++  ++  + E  E++  +  ++   G R   +P  
Sbjct: 669 YAGTWVKVFSG-ERP-PRPIVAVHNKKISIKQIVEGPEIHAPIQNDVAIEGERFGFKPFW 726

Query: 371 LEEEHHRVM 379
           L +  H V+
Sbjct: 727 LGKAGHYVL 735


>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 71  QHKYVLGESGGEWIGVEDEPLEGFKW-RGGSERETTGLL---LWSQP--FKATLANGEKV 124
           Q  + +  SGG WIG++ E  +GF+W    S    TG+L   L ++P   K    + EKV
Sbjct: 441 QFVHTISASGGTWIGLKREN-DGFRWVADNSLISDTGILDRYLTNKPKYVKPLQYSNEKV 499

Query: 125 VIF--LMDTQGTFDSQSTVRDNATVFALSTLISSVQIYNLSQNIEEDDLQ 172
             +  L+D++ + +S +   D   +   +    ++   N    +E D  +
Sbjct: 500 KRYCTLLDSKSSKESLNISLDRQYIILYTLYKITITTENEFSVVEGDKFE 549


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 171 LQHLQLFTDYGQLAQESSSGRPFQRLQFLVRDWSFP 206
           LQH+ L +  G +A+E+ + RP Q+L+ L  +W  P
Sbjct: 64  LQHIPL-SPAGVIAEEARTDRPSQQLRSLNGEWDAP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,870
Number of Sequences: 59808
Number of extensions: 558485
Number of successful extensions: 4263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4250
Number of HSP's gapped (non-prelim): 17
length of query: 528
length of database: 16,821,457
effective HSP length: 85
effective length of query: 443
effective length of database: 11,737,777
effective search space: 5199835211
effective search space used: 5199835211
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)