Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000801-TA|BGIBMGA000801-PA|IPR001440|Tetratricopeptide
TPR_1, IPR013026|Tetratricopeptide region
         (289 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 187 ITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDPENVK 227
           IT   +K +N++ +C+      E  L +   A+K++P  VK
Sbjct: 150 ITMYDLKSHNDI-YCEKYEKNGETYLRIKKHAVKFNPAKVK 189


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 24  DYTIVPYEDSRCKIK 38
           D T  P++D RC++K
Sbjct: 151 DITWFPFDDQRCEMK 165


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 140 HHKEKGVELVKEKRILD 156
           +HKE  +ELV+E+ + D
Sbjct: 156 YHKELQIELVREEILFD 172


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 18  KLKNPGDYTIVPYEDSRCKIKITNLACT 45
           KL    ++ I P++   CK+++ +L+ T
Sbjct: 160 KLSCAMNFLIYPHDTQECKLQMESLSHT 187


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 9/56 (16%)

Query: 230 YRRSLAYTGLEMYVEAWADIQRVLQITPAEKAAVQQSRHLKPIIDRINEDYSSVVK 285
           Y   +    L  ++ +  D+ R++QITP     +Q ++H      + NE Y++++K
Sbjct: 300 YLNEVHTASLRKFILSAFDMARIIQITPKR---IQYAQH------KENELYANLMK 346


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 9/56 (16%)

Query: 230 YRRSLAYTGLEMYVEAWADIQRVLQITPAEKAAVQQSRHLKPIIDRINEDYSSVVK 285
           Y   +    L  ++ +  D+ R++QITP     +Q ++H      + NE Y++++K
Sbjct: 338 YLNEVHTASLRKFILSAFDMARIIQITPKR---IQYAQH------KENELYANLMK 384


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 118 KEVT-EEQLISDWSWERLMEASIHHKEKGVELVK 150
           K +T  E L   W  +R   AS+ H+++ V+ +K
Sbjct: 157 KRITASEALKHPWICQRERVASVVHRQETVDCLK 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,329
Number of Sequences: 429
Number of extensions: 2947
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 289
length of database: 140,377
effective HSP length: 57
effective length of query: 232
effective length of database: 115,924
effective search space: 26894368
effective search space used: 26894368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)