GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000801-TA|BGIBMGA000801-PA|IPR001440|Tetratricopeptide
TPR_1, IPR013026|Tetratricopeptide region
         (289 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.62 
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   4.4  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 136 EASIHHKEKGVELVKEKRI-LDAFRRFSKALKMVVAXXXXXXXXXXXXKAVAITDLKVKL 194
           E S+ +    + +++EK+  L++  R  + L  + A            +  A+ D   KL
Sbjct: 279 EKSLEYLSNEIVVLEEKQSNLESAGRMGELLSELQAKLAWRNVIDQEEQLAAVDDELKKL 338

Query: 195 YNNLAHCQLQYNEYEAALDLCNRAIKYDPENVKALYRRSLAYTGLEMYVEAWADIQRVLQ 254
             ++   + +    EA +   +  I     ++++   +   Y  L+   EA+  ++R LQ
Sbjct: 339 RTSIEEQEHRIRNREALVAKTDSTIDTYRADIES---KKQEYVALK---EAYGTVRRTLQ 392

Query: 255 ITPAEKAAVQQS-RHLKPIIDRINED 279
              A++AA+++  R+    + RI +D
Sbjct: 393 DVQAKQAAIERGMRNASERVTRIQKD 418


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 141  HKE-KGVELVKEKRILDAFRRFS 162
            HKE KG++  K K+I DA R  S
Sbjct: 2312 HKEIKGIDEAKSKKIWDALREKS 2334


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,505
Number of Sequences: 2123
Number of extensions: 10634
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 289
length of database: 516,269
effective HSP length: 63
effective length of query: 226
effective length of database: 382,520
effective search space: 86449520
effective search space used: 86449520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)