Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000800-TA|BGIBMGA000800-PA|IPR011012|Longin-like,
IPR000804|Clathrin adaptor complex, small chain
(142 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 177 7e-46
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 150 9e-38
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 103 1e-23
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 43 2e-05
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 43 2e-05
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 36 0.003
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.1
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 27 1.1
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 1.9
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 26 2.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 2.6
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 3.4
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 3.4
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 3.4
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 25 4.5
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 24 7.8
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 177 bits (430), Expect = 7e-46
Identities = 81/143 (56%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIVY 59
MI+FILIQNR GK RL+K+Y+ FDDDEK +L +H +++ R+ K NF+E+ N K+VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
RRYAGLYFC CVD DN+L LE IH FVE+L+ +F NVCELDL+FNFYKV ++DE+ L
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 120 AGEIRETSQTKVLKQLLMLNSLE 142
GEI E+++ VL+++ L LE
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 150 bits (363), Expect = 9e-38
Identities = 69/135 (51%), Positives = 95/135 (70%)
Query: 2 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 61
I+F L+ +R GK RLAKW+ E+ K+I +V ++V R K NFVE++ KIVYRR
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 62 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
YA L+F ++ +DN L LE IH FVE L++YF NVCELDL+FNF K Y V++E+ LAG
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122
Query: 122 EIRETSQTKVLKQLL 136
E++E+S+T VL +L
Sbjct: 123 ELQESSKTNVLSAVL 137
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 103 bits (246), Expect = 1e-23
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF----K 56
MI + I N GK RL K+Y D+ +QKLI +++A V+ R NF+E +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 57 IVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
I+YR+YA LYF VD ++ L L+ I FVE L+ F+NVCELDLVF F +++ ++ E
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120
Query: 117 MFLAGEIRETSQTKVL 132
+ G + ET+ +++
Sbjct: 121 VVSGGLVLETNLNEIV 136
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 5 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAG 64
+ I NR GK +++ + + L+ A+V+ + T VE N + VY+
Sbjct: 6 VSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTT--VESDNVRFVYQPLDE 63
Query: 65 LYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124
LY + ++ N L ++ +H +V+ ++ E +++ ++++T DE G
Sbjct: 64 LYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRD 123
Query: 125 ETSQTKVLKQLLM 137
S T++ L M
Sbjct: 124 NVSLTQIKTYLEM 136
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 42.7 bits (96), Expect = 2e-05
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVH-AVVTVRDAKHTNFVEFRNFKIVY 59
MI + I N G T + K F D K+ + E A++T D +H V + +Y
Sbjct: 1 MISGLFIFNLKGDTLICK---TFRHDLKKSVTEIFRVAILTNTDYRHP-IVSIGSSTYIY 56
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
++ LY N N + LE + + ++ L YF + E + N ++ ++DEM
Sbjct: 57 TKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMID 116
Query: 120 AGEIRET 126
G I+ T
Sbjct: 117 YGIIQTT 123
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.003
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 58 VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
+Y + +Y +N + + L + +V +YF + E + NF VY ++DE+
Sbjct: 58 IYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117
Query: 118 FLAGEIRETSQTKVLKQLLMLNS 140
G +T++TK+L++ + S
Sbjct: 118 MDFG-FPQTTETKILQEYITQTS 139
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 71 VDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFY-KVYTVVDEMF 118
++ +DN+L YL L YF + + V N K TV+D ++
Sbjct: 111 INASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLY 159
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 72 DVNDNNLCYLEAIHNFVEVLNEYFHNVCELD 102
D +DN+ C+ N + LN YF N ++D
Sbjct: 180 DKSDNSNCWRPIATNLLHRLNAYFQNEVKMD 210
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 1.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 85 HNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
H V +E F N EL +V + + ++D + G I E +LKQLL
Sbjct: 228 HPGVVQCHEIFENDDELFIVMEYVEGGDLMDFLIANGSIDEQDCKPLLKQLL 279
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 13 KTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKH 46
K RL WY + ++ L+E+ A + + KH
Sbjct: 141 KRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKH 174
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 6 LIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 61
L+ N GK + ++D + LIE+ + + + FVE+++ + R+
Sbjct: 651 LLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAFVEYKDATVANRK 706
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 3.4
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 39 VTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNF---VEVLNEYF 95
VTV + N F + + IC NDNNL L+ H ++VL +Y
Sbjct: 181 VTVHETGFGNIENLATFSTKFVALSSHKNYICGLTNDNNLYILQHSHQAGTKLKVLGKYH 240
Query: 96 HNVCELDLVFNFYKV---YTVVDEMF 118
+ E + +F + Y VV +F
Sbjct: 241 VSSIEKQVAIHFQQSKEGYEVVHVVF 266
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 18 KWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLY 66
K +++ D KL+ E+H TVRD K F + F + ++Y +Y
Sbjct: 122 KGHISAFDWRTGKLLTELHLRETVRDVKW--FHNHQYFAVAQKKYVYVY 168
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 17 AKWYMNFDDDEKQKLI---EEVHAVVTVRDAKHT-NFVEFRNFKIVYRR 61
A + +FD+ E+++ + +E+HA VT + K+T + + R+ K+ RR
Sbjct: 224 AFYQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERR 272
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 4.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 17 AKWYMNFDDDEKQKLIE 33
++WY+ FD D+ +L+E
Sbjct: 178 SRWYLPFDKDDDNQLVE 194
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 FILIQNRAGKTRLAKWYM-NFDDDEKQKLIEEV 35
F +QNR+G+ L +W+ F D Q + ++
Sbjct: 21 FFQLQNRSGQQDLIEWFREKFGKDISQPSVSQI 53
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.142 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,020
Number of Sequences: 5004
Number of extensions: 27625
Number of successful extensions: 120
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 50 (24.2 bits)
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