GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000800-TA|BGIBMGA000800-PA|IPR011012|Longin-like,
IPR000804|Clathrin adaptor complex, small chain
         (142 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   2.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   7.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   9.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   9.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   9.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 60  RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
           RR    Y  IC  V+  N  Y  A+   + V+  Y  N+ +L LV+   K
Sbjct: 220 RRVRKNYNSICELVDAFNNIYGLAMLEIIIVVITYVLNLTDLFLVYGMSK 269


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
          variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 22 NFDDDEKQKLIEEVH--AVVTVRDAK 45
          NF DDE   L E ++  +  TV++ K
Sbjct: 15 NFSDDESSPLTENIYGGSTRTVQETK 40


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
          variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 22 NFDDDEKQKLIEEVH--AVVTVRDAK 45
          NF DDE   L E ++  +  TV++ K
Sbjct: 15 NFSDDESSPLTENIYGGSTRTVQETK 40


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
          CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 22 NFDDDEKQKLIEEVH--AVVTVRDAK 45
          NF DDE   L E ++  +  TV++ K
Sbjct: 15 NFSDDESSPLTENIYGGSTRTVQETK 40


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
          CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 22 NFDDDEKQKLIEEVH--AVVTVRDAK 45
          NF DDE   L E ++  +  TV++ K
Sbjct: 15 NFSDDESSPLTENIYGGSTRTVQETK 40


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 4   FILIQNRAGKTRLAKWYMN 22
           +  I N   +  L+ WYMN
Sbjct: 371 YSFINNLTDRKLLSAWYMN 389


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 4   FILIQNRAGKTRLAKWYMN 22
           +  I N   +  L+ WYMN
Sbjct: 263 YSFINNLTDRKLLSAWYMN 281


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 62  YAGLYFCICVDVNDNNLCYLEAIHN 86
           +  LYFCI   + D+ +   +  H+
Sbjct: 254 FCSLYFCIFGYIYDDEMVVPQNFHD 278


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 62  YAGLYFCICVDVNDNNLCYLEAIHN 86
           +  LYFCI   + D+ +   +  H+
Sbjct: 79  FCSLYFCIFGYIYDDEMVVPQNFHD 103


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 89  EVLNEYFHN 97
           E+LNEYF++
Sbjct: 243 EILNEYFYS 251


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.142    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,498
Number of Sequences: 317
Number of extensions: 1563
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 114,650
effective HSP length: 51
effective length of query: 91
effective length of database: 98,483
effective search space:  8961953
effective search space used:  8961953
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.3 bits)
S2: 39 (19.8 bits)