GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000800-TA|BGIBMGA000800-PA|IPR011012|Longin-like,
IPR000804|Clathrin adaptor complex, small chain
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...   177   7e-46
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...   150   9e-38
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...   103   1e-23
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    43   2e-05
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    43   2e-05
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    36   0.003
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.1  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    27   1.1  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   1.9  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    26   2.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   2.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   3.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   3.4  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.4  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   4.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    24   7.8  

>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  177 bits (430), Expect = 7e-46
 Identities = 81/143 (56%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 1   MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIVY 59
           MI+FILIQNR GK RL+K+Y+ FDDDEK +L   +H +++ R+ K   NF+E+ N K+VY
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60

Query: 60  RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
           RRYAGLYFC CVD  DN+L  LE IH FVE+L+ +F NVCELDL+FNFYKV  ++DE+ L
Sbjct: 61  RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120

Query: 120 AGEIRETSQTKVLKQLLMLNSLE 142
            GEI E+++  VL+++  L  LE
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score =  150 bits (363), Expect = 9e-38
 Identities = 69/135 (51%), Positives = 95/135 (70%)

Query: 2   IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 61
           I+F L+ +R GK RLAKW+      E+ K+I +V ++V  R  K  NFVE++  KIVYRR
Sbjct: 3   IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62

Query: 62  YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
           YA L+F   ++ +DN L  LE IH FVE L++YF NVCELDL+FNF K Y V++E+ LAG
Sbjct: 63  YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122

Query: 122 EIRETSQTKVLKQLL 136
           E++E+S+T VL  +L
Sbjct: 123 ELQESSKTNVLSAVL 137


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score =  103 bits (246), Expect = 1e-23
 Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 1   MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF----K 56
           MI  + I N  GK RL K+Y   D+  +QKLI +++A V+ R     NF+E        +
Sbjct: 1   MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60

Query: 57  IVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
           I+YR+YA LYF   VD  ++ L  L+ I  FVE L+  F+NVCELDLVF F +++ ++ E
Sbjct: 61  IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120

Query: 117 MFLAGEIRETSQTKVL 132
           +   G + ET+  +++
Sbjct: 121 VVSGGLVLETNLNEIV 136


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 5   ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAG 64
           + I NR GK  +++ +        + L+    A+V+ +    T  VE  N + VY+    
Sbjct: 6   VSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTT--VESDNVRFVYQPLDE 63

Query: 65  LYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124
           LY  +  ++  N L  ++ +H   +V+     ++ E +++   ++++T  DE    G   
Sbjct: 64  LYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRD 123

Query: 125 ETSQTKVLKQLLM 137
             S T++   L M
Sbjct: 124 NVSLTQIKTYLEM 136


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 1   MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVH-AVVTVRDAKHTNFVEFRNFKIVY 59
           MI  + I N  G T + K    F  D K+ + E    A++T  D +H   V   +   +Y
Sbjct: 1   MISGLFIFNLKGDTLICK---TFRHDLKKSVTEIFRVAILTNTDYRHP-IVSIGSSTYIY 56

Query: 60  RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
            ++  LY       N N +  LE + + ++ L  YF  + E  +  N   ++ ++DEM  
Sbjct: 57  TKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMID 116

Query: 120 AGEIRET 126
            G I+ T
Sbjct: 117 YGIIQTT 123


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 58  VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
           +Y  +  +Y      +N + +  L  +    +V  +YF  + E  +  NF  VY ++DE+
Sbjct: 58  IYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117

Query: 118 FLAGEIRETSQTKVLKQLLMLNS 140
              G   +T++TK+L++ +   S
Sbjct: 118 MDFG-FPQTTETKILQEYITQTS 139


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 71  VDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFY-KVYTVVDEMF 118
           ++ +DN+L YL         L  YF  +   + V N   K  TV+D ++
Sbjct: 111 INASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLY 159


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 72  DVNDNNLCYLEAIHNFVEVLNEYFHNVCELD 102
           D +DN+ C+     N +  LN YF N  ++D
Sbjct: 180 DKSDNSNCWRPIATNLLHRLNAYFQNEVKMD 210


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 85  HNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
           H  V   +E F N  EL +V  + +   ++D +   G I E     +LKQLL
Sbjct: 228 HPGVVQCHEIFENDDELFIVMEYVEGGDLMDFLIANGSIDEQDCKPLLKQLL 279


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 13  KTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKH 46
           K RL  WY  +    ++ L+E+  A +  +  KH
Sbjct: 141 KRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKH 174


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 6   LIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 61
           L+ N  GK    +   ++D  +   LIE+ + + +        FVE+++  +  R+
Sbjct: 651 LLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAFVEYKDATVANRK 706


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 39  VTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNF---VEVLNEYF 95
           VTV +    N      F   +   +     IC   NDNNL  L+  H     ++VL +Y 
Sbjct: 181 VTVHETGFGNIENLATFSTKFVALSSHKNYICGLTNDNNLYILQHSHQAGTKLKVLGKYH 240

Query: 96  HNVCELDLVFNFYKV---YTVVDEMF 118
            +  E  +  +F +    Y VV  +F
Sbjct: 241 VSSIEKQVAIHFQQSKEGYEVVHVVF 266


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 18  KWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLY 66
           K +++  D    KL+ E+H   TVRD K   F   + F +  ++Y  +Y
Sbjct: 122 KGHISAFDWRTGKLLTELHLRETVRDVKW--FHNHQYFAVAQKKYVYVY 168


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 17  AKWYMNFDDDEKQKLI---EEVHAVVTVRDAKHT-NFVEFRNFKIVYRR 61
           A +  +FD+ E+++ +   +E+HA VT +  K+T + +  R+ K+  RR
Sbjct: 224 AFYQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERR 272


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 17  AKWYMNFDDDEKQKLIE 33
           ++WY+ FD D+  +L+E
Sbjct: 178 SRWYLPFDKDDDNQLVE 194


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 4  FILIQNRAGKTRLAKWYM-NFDDDEKQKLIEEV 35
          F  +QNR+G+  L +W+   F  D  Q  + ++
Sbjct: 21 FFQLQNRSGQQDLIEWFREKFGKDISQPSVSQI 53


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.142    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,020
Number of Sequences: 5004
Number of extensions: 27625
Number of successful extensions: 120
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 50 (24.2 bits)