Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000800-TA|BGIBMGA000800-PA|IPR011012|Longin-like,
IPR000804|Clathrin adaptor complex, small chain
(142 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0) 280 3e-76
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 6e-20
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.052
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 33 0.068
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 31 0.37
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19) 31 0.37
SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.64
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8) 30 0.64
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4) 30 0.84
SB_25465| Best HMM Match : SHD1 (HMM E-Value=4) 30 0.84
SB_8207| Best HMM Match : SHD1 (HMM E-Value=4) 30 0.84
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28) 30 0.84
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1) 30 0.84
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6) 30 0.84
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 29 1.1
SB_30761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 27 5.9
SB_19728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
Length = 141
Score = 280 bits (687), Expect = 3e-76
Identities = 130/141 (92%), Positives = 136/141 (96%)
Query: 2 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 61
IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA+VTVRDAKHTNFVEFRNFKIVYRR
Sbjct: 1 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRR 60
Query: 62 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
YAGLYFC CVDV+DNNL YLEAIHNFVEVLNE+FHNVCELDLVFNFYKVY+VVDEMFLAG
Sbjct: 61 YAGLYFCFCVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAG 120
Query: 122 EIRETSQTKVLKQLLMLNSLE 142
E+RETSQ+KVLKQL ML LE
Sbjct: 121 ELRETSQSKVLKQLNMLQQLE 141
>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 93.5 bits (222), Expect = 6e-20
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 6/121 (4%)
Query: 28 KQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDNNLCYL 81
+Q++I+E +V+ RD NF+E +FK+VYR YA LYF CVD +++ L L
Sbjct: 2 QQQIIKETFHLVSRRDDNVCNFLEGGSLIGGADFKLVYRHYATLYFVFCVDSSESELGIL 61
Query: 82 EAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSL 141
+ I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++L + N L
Sbjct: 62 DLIQVFVETLDKCFENVCELDLIFHMDKVHHILAEIVMGGMVLETNMSEILTHIEAQNKL 121
Query: 142 E 142
E
Sbjct: 122 E 122
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 33.9 bits (74), Expect = 0.052
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 7 IQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDA-KHTNFVEFRNFKIVYRRYAGL 65
I + GK +++ ++ + L+ ++T + K FVE + + VY+ L
Sbjct: 476 ICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVYQPLEKL 535
Query: 66 YFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE 125
Y + + N L LE + F V+ EY + E ++ + +++ DE+ G RE
Sbjct: 536 YMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVALG-YRE 594
Query: 126 TSQTKVLKQLLMLNSLE 142
++ ++S E
Sbjct: 595 NVNLAQIRTFTEMDSHE 611
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 33.5 bits (73), Expect = 0.068
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 59
MI I N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGFFIYNHKGEVLISRVYR---DDIGRNTVDAFRVNVIHARGQIRSPVTNIARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
R ++ N N E + V+++ YF V E + NF +Y ++DE+
Sbjct: 58 IRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDEIAD 117
Query: 120 AGEIRETSQTKVLKQLL 136
G ++T T +LK +
Sbjct: 118 YGYPQKT-DTAILKTFI 133
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 69 ICVDVNDNNLCYLEA-IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETS 127
+C + N+ + +H V V +YF + E + NF +Y ++DE+ G + +
Sbjct: 13 VCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFG-YPQFT 71
Query: 128 QTKVLKQLL 136
+TK+L++ +
Sbjct: 72 ETKILQEYI 80
>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
Length = 662
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 12 GKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGL 65
G +A+ Y + D E ++ I ++ +T RD K RN I+YR Y G+
Sbjct: 543 GVQAIAEQYNSETDSETEEEIPIQYSAITGRDPKKAYKERERNIWIMYRAYRGM 596
>SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 30.3 bits (65), Expect = 0.64
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 120 MRFEDIERQMWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158
>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
Length = 310
Score = 30.3 bits (65), Expect = 0.64
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 199 MRFEDIERQVWLSEIHN-DSRRDPRQNNKLRTFRTFKVVY 237
>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 211
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 120 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158
>SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 147
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 56 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 94
>SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 208
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 41 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 79
>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
Length = 478
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 120 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158
>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 199 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 237
>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 409 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 447
>SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)
Length = 112
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 41 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 79
>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 384 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 422
>SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)
Length = 217
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 59
M F+D E+Q + E+H + RD + N + FR FK+VY
Sbjct: 146 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 184
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 21 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVND 75
MN + KLIEE+ T+ + ++ + RN+++ Y + L F + ++D
Sbjct: 374 MNMSKAQVAKLIEELVPDCTITNTENGEDKDKRNYEVSYNKIRNLGFKATISIDD 428
>SB_30761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 61 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLN 92
RY G++ C C+ D NLC+ F +L+
Sbjct: 6 RYMGIFLCSCL---DPNLCHKSVTDRFAVILD 34
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 69 ICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCEL 101
+ ++ D L +LE + ++ L +Y H + EL
Sbjct: 636 LVTELKDQRLAFLETLEKDMQALQDYVHKLLEL 668
>SB_19728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 16 LAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTN 48
L + Y++ DDE QK IEE++ VV R H N
Sbjct: 119 LIEMYLHRFDDELQK-IEELNNVVKGRQRMHVN 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.328 0.142 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,551,168
Number of Sequences: 59808
Number of extensions: 178735
Number of successful extensions: 478
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 21
length of query: 142
length of database: 16,821,457
effective HSP length: 75
effective length of query: 67
effective length of database: 12,335,857
effective search space: 826502419
effective search space used: 826502419
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)
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