Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000800-TA|BGIBMGA000800-PA|IPR011012|Longin-like,
IPR000804|Clathrin adaptor complex, small chain
(142 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 290 2e-79
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 151 2e-37
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 110 3e-25
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 44 5e-05
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 43 7e-05
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 43 7e-05
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 36 0.011
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 35 0.019
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 35 0.019
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 33 0.10
Z93386-4|CAB07644.1| 370|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical pr... 29 0.95
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 29 1.7
Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z82070-9|CAB04916.3| 210|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL132872-4|CAJ76957.1| 210|Caenorhabditis elegans Hypothetical ... 28 2.9
AF040647-4|AAY55829.1| 152|Caenorhabditis elegans Hypothetical ... 28 2.9
AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a prot... 28 2.9
Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z47356-7|CAD31695.1| 249|Caenorhabditis elegans Hypothetical pr... 27 6.7
U40419-3|AAK67216.3| 260|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF026204-6|AAB71248.1| 242|Caenorhabditis elegans Hypothetical ... 27 6.7
Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical pr... 26 8.8
AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate cyc... 26 8.8
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 290 bits (712), Expect = 2e-79
Identities = 136/142 (95%), Positives = 138/142 (97%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 60
MIRFILIQNRAGKTRLAKWYM+FDDDEKQKLIEEVHA VTVRDAKHTNFVEFRNFKIVYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYR 60
Query: 61 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
RYAGLYFCICVD+ DNNL YLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GEIRETSQTKVLKQLLMLNSLE 142
GEIRETSQTKVLKQLLML SLE
Sbjct: 121 GEIRETSQTKVLKQLLMLTSLE 142
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 151 bits (365), Expect = 2e-37
Identities = 64/135 (47%), Positives = 97/135 (71%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 60
M++++L+ +R GK RL KWY + D +K+K+ E+ + R K F+E+++ K+VY+
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYK 60
Query: 61 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
RYA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE LA
Sbjct: 61 RYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLA 120
Query: 121 GEIRETSQTKVLKQL 135
GEI+ETS+ +VLK +
Sbjct: 121 GEIQETSKKQVLKAI 135
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 110 bits (265), Expect = 3e-25
Identities = 51/141 (36%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
MI+ IL+ N GK RL K+Y ++ ++++Q+++ E +V+ RD NF+E +
Sbjct: 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGND 60
Query: 55 FKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
++++YR YA LYF CVD +++ L L+ I FVE L+ F NVCELDL+F+ +V+ ++
Sbjct: 61 YRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHIL 120
Query: 115 DEMFLAGEIRETSQTKVLKQL 135
E+ + G + ET+ ++L+++
Sbjct: 121 GEIVMGGMVLETNMNEILQRI 141
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 59 YRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMF 118
Y +Y +Y N N + L A++ VEV EYF + E + NF +Y + DEM
Sbjct: 59 YIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEML 118
Query: 119 LAGEIRETSQTKVLKQLL 136
G +T+++K+L++ +
Sbjct: 119 DFG-YPQTTESKILQEFI 135
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 43.2 bits (97), Expect = 7e-05
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 5 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 63
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 64 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM G
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-F 122
Query: 124 RETSQTKVLKQLL 136
+T+++++L++ +
Sbjct: 123 PQTTESRILQEYI 135
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 43.2 bits (97), Expect = 7e-05
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 5 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 63
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 64 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM G
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-F 122
Query: 124 RETSQTKVLKQLL 136
+T+++++L++ +
Sbjct: 123 PQTTESRILQEYI 135
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 35.9 bits (79), Expect = 0.011
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 45 KHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLV 104
+HT FVE + + VY +Y + N N L LE + FV V+ EY + E +++
Sbjct: 51 QHT-FVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEIL 109
Query: 105 FNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSLE 142
+ + + DE+ G RE+ ++ ++S E
Sbjct: 110 AHDFDLIFAFDEVVTLG-YRESVNLAQIRTFTEMDSHE 146
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 35.1 bits (77), Expect = 0.019
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 59
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 120 AGEIRET 126
G + T
Sbjct: 118 FGYPQNT 124
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 35.1 bits (77), Expect = 0.019
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 59
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 120 AGEIRET 126
G + T
Sbjct: 118 FGYPQNT 124
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 32.7 bits (71), Expect = 0.10
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 59
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 119
+ ++ C N N + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 120 AGEIRET 126
G + T
Sbjct: 118 FGYPQNT 124
>Z93386-4|CAB07644.1| 370|Caenorhabditis elegans Hypothetical
protein R11H6.5 protein.
Length = 370
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 14 TRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDV 73
TR W+ + I+E A+V V + + +F+ I +Y Y C+
Sbjct: 193 TRHITWFSQISSELPPAFIQEWQALVRVLKDTRSRYSDFQPLSIWTIQYLAFY-CLANGP 251
Query: 74 NDNNLCYLEAIHNFVEVL 91
N C A F E++
Sbjct: 252 NRQKACLGTAFRRFFEII 269
>Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical
protein C23H4.2 protein.
Length = 583
Score = 29.5 bits (63), Expect = 0.95
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 20 YMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFR-NFKIVYRRYAGLYFCIC 70
Y NFD +QKL++ H ++ D + FR + I+Y+ + L +C
Sbjct: 512 YQNFDAKNQQKLVDSTHFIINTTD----QAIIFRTDISILYQWWFYLIIAVC 559
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 65 LYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
L+ + V L +E +H ++ +YF + + N V+ ++DEM
Sbjct: 64 LFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEM 116
>Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical
protein R09D1.3 protein.
Length = 435
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 KTRLAKWYMNFD--DDEKQKLIEEVHAVVTVRDAKHTNFVEFRN 54
K R+ +Y +D D K +L + HAV D K+ ++F+N
Sbjct: 75 KRRIVGYYSEYDSTDISKNQLAKLTHAVFAFVDIKYDGTLQFKN 118
>Z82070-9|CAB04916.3| 210|Caenorhabditis elegans Hypothetical
protein W04E12.7 protein.
Length = 210
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 20 YMNFDDDEKQK-LIEEVHAVVTVRD 43
Y NF+DD+ ++ +IE H VVTV D
Sbjct: 8 YPNFEDDDMERYVIENSHDVVTVFD 32
>AL132872-4|CAJ76957.1| 210|Caenorhabditis elegans Hypothetical
protein W04E12.7 protein.
Length = 210
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 20 YMNFDDDEKQK-LIEEVHAVVTVRD 43
Y NF+DD+ ++ +IE H VVTV D
Sbjct: 8 YPNFEDDDMERYVIENSHDVVTVFD 32
>AF040647-4|AAY55829.1| 152|Caenorhabditis elegans Hypothetical
protein F54D12.10 protein.
Length = 152
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 68 CICVDVNDNNLCYLEAIHNFVEVLNE 93
CI V N N CYL A+ + ++V N+
Sbjct: 56 CILVHSNSLNRCYLYAVGDIIQVRND 81
>AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a protein
protein 222 protein.
Length = 377
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 36 HAVVTVRDAKHTNFVEFRNFKIVYRRYAG 64
H+ V+ R + F+EF +IVYR + G
Sbjct: 114 HSAVSFRMCRDWTFLEFSKHEIVYREFEG 142
>Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical
protein B0391.11 protein.
Length = 378
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 36 HAVVTVRDAKHTNFVEFRNFKIVYRRYAG 64
H+ V+ R + F+EF +IVYR + G
Sbjct: 114 HSAVSFRMCRDWAFLEFSKHEIVYREFEG 142
>Z47356-7|CAD31695.1| 249|Caenorhabditis elegans Hypothetical
protein T15H9.7 protein.
Length = 249
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 39 VTVRDAKHTNFVEFRNFKIVYRRYAGLYFCIC 70
VT+ + + +FVE + K VY++ +G C C
Sbjct: 139 VTLEEVYNGHFVEIKRKKAVYKQTSGTRQCNC 170
>U40419-3|AAK67216.3| 260|Caenorhabditis elegans Hypothetical
protein C27F2.9 protein.
Length = 260
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 22 NFDDDEKQKLIEEVHAVVTVRDAKHT 47
N D+DE QKL E+ + T RDA T
Sbjct: 66 NIDNDEFQKLTEKAEMLSTWRDADVT 91
>AF026204-6|AAB71248.1| 242|Caenorhabditis elegans Hypothetical
protein C30E1.3 protein.
Length = 242
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 41 VRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNL--CYL 81
V+D+K+ NF+ F+ F V AG+ + N NNL CYL
Sbjct: 64 VKDSKYFNFLFFQVFGFVLP--AGITLFVSRQQNRNNLDVCYL 104
>Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical
protein T04D3.4 protein.
Length = 688
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 73 VNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE 125
V N+C + ++ V +LN+ + L + + YKV T+ D + G + E
Sbjct: 431 VTFTNICAMCTPYDVVTLLNDLYLRFDRLVGLHDAYKVETIGDAYMIVGGVPE 483
>AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 688
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 73 VNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE 125
V N+C + ++ V +LN+ + L + + YKV T+ D + G + E
Sbjct: 431 VTFTNICAMCTPYDVVTLLNDLYLRFDRLVGLHDAYKVETIGDAYMIVGGVPE 483
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.328 0.142 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,846
Number of Sequences: 27539
Number of extensions: 152409
Number of successful extensions: 557
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 24
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)
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