Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000799-TA|BGIBMGA000799-PA|undefined
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 30 0.60
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 29 1.1
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 2.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 4.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 4.2
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 5.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 5.6
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 27 5.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 5.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 7.4
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 9.8
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 9.8
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.60
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 204 SPXXXXXXXXXXXXXSRSTARKRSYTQSDAEDARAKRKRVTETAVEPARKRTFSAS---A 260
+P S+ T + S +E+++ +E AVEPA+ T S S
Sbjct: 284 TPVFSFSTTMASADASKETKQTHETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPD 343
Query: 261 KLSELFTPQRVVTPSKP 277
K + TP++ T + P
Sbjct: 344 KPIKFDTPEKKFTFTNP 360
Score = 27.5 bits (58), Expect = 4.2
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 330 EKISPKASTTXXXXXXXXXXXXXXXNPYDF--QVNPESKPGYTRFGFKLNMDINPFCVPT 387
E S + +T NP+ F + N ESKP F F M T
Sbjct: 243 ETSSNQTATGTAATTTNQFSFNTAANPFAFAKKENEESKPLTPVFSFSTTMASADASKET 302
Query: 388 KNINHTKASKL--SKPN 402
K + TK SK SKP+
Sbjct: 303 KQTHETKDSKSEESKPS 319
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 37 LNGNTDGSCINVIKCKKRSNYVRYPTDDEQHSADNDLDGIETKQSRSTRKNTLKDRNTIS 96
+ N D S +++SN + T +H + + TK S+S L+D+
Sbjct: 5 MENNKDESISTKNALEEKSNETKDETSKRKHDPAEEESAVSTKVSKS---EPLEDKGNAE 61
Query: 97 VN--NENTESFDAKKHVXXXXXXKKASESSIE 126
V E T+S K V K ES+ E
Sbjct: 62 VKEFKETTKSNGVKPEVEITESTKIQKESNTE 93
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 6 GKRIRSMSNDSTVKDDVDITVRSERKVRNKLLNGNTDGSCINVIKCKKRSNYVRYPTDDE 65
GK ++ S T K ++ R E + + DGS + I+ + S + D
Sbjct: 110 GKPLKKKSRSKTPKREIARRQRDEDEWESDEYEEVVDGSASHPIE--EDSVSTDFQNHDY 167
Query: 66 QHSADNDLDGIETKQSRSTRKNTLKDRNTISVNNENTESFDAK 108
+ S+D + + + + R + L+ ++ + NE E + +K
Sbjct: 168 EKSSDPETERLNDLREREEFEERLRRKDLEAATNEFVEDYSSK 210
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.5 bits (58), Expect = 4.2
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 179 IVESVENENFNKGNLSTDSFHSASESPXXXXXXXXXXXXXSRSTARKRSYTQSDAEDARA 238
IV S N LST A S R R SYT+ D +
Sbjct: 68 IVTSTANSTVVSSALSTPKIDDAQNSDDVRVDGTRRSSRAKRPVYRDFSYTEIDEHEIPI 127
Query: 239 KRKRVTETAVEPARKRTFSA 258
+KR ++ A P +K++ ++
Sbjct: 128 PKKRKSKPA--PKQKKSVAS 145
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 246 TAVEPARKRTFSASAKLSELFTPQRVVTPSKPKPNSQFNRTKLPNFAALHQKQFDKMES 304
T + +T + AK + P + + PS N ++P A+LH+ ES
Sbjct: 83 TQISNPTSKTNNVRAKARNIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKES 141
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 65 EQHSADNDLDGIETKQSRSTRKNTLKDRNTISVNNENTESFDAKKHVXXXXXXKKASES- 123
E+ AD D G E+K S + L+ + ++ N + D++ + K S S
Sbjct: 1029 EEIQADADAFG-ESKGSDELQSRILRRKKMMASKNSSDSDSDSEDNFLASLTPKTNSSSI 1087
Query: 124 SIENVP 129
SIEN+P
Sbjct: 1088 SIENLP 1093
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 62 TDDEQHSADNDL-DGIETKQSRSTRKNTLKDRNTISVNNENTESFDAKKHVXXXXXXKKA 120
T +E H + + + +++K + + +N + +++ +N+ + AKK K++
Sbjct: 11 TKNEIHQVTSRVQEKLDSKSTNAVEQNNNSSQASVTKDNKKKAAKRAKKKAAKKK--KQS 68
Query: 121 SESSIENVPVTENMYKREE 139
+ +S + PV E + +EE
Sbjct: 69 AAASASSTPVEEAQHAQEE 87
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 276 KPKPNSQFNRTKLPNFAALHQKQFDKMESLDECQERKAKRAKQLLTPTGSVGVSEKI 332
KPKP +R K PN A Q +KM L E ++ +R L +PT S +K+
Sbjct: 278 KPKP---IDRVKKPNKDA----QEEKMRRLAEAEQMSKRRKLNLPSPTVSQDELDKV 327
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 26 VRSERKVRNKLLNGNTDGSCINVIKCKKRSNYVRYPTDDEQHSADNDLD-GIETKQSRST 84
V +R N+ +GN + S ++ + K ++ +P+D + +N L+ E+ +R
Sbjct: 328 VSEDRITTNQSRSGNDESSLVDFLTSKSDNSSFNFPSDTYE-GTENILETAYESTTARQV 386
Query: 85 R-----KNTLKDRNTISVNN 99
K+T+K R ++NN
Sbjct: 387 NNNKPGKSTVKKREEETLNN 406
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 412 SLTGTTSTRKETAKQLVMREKSFTDKRTGKIQETRTV 448
++TG+ +K AK M +K DK++GK+ + +
Sbjct: 537 NMTGSEQQKKAKAKVKAMNKKLEKDKQSGKVLDEEII 573
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 23 DITVRSERKVRNKLLNGNTDGSCI 46
D+ + +V+N+ L NTDG CI
Sbjct: 939 DLQIIRSVEVKNEFLKSNTDGICI 962
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/63 (19%), Positives = 32/63 (50%)
Query: 380 INPFCVPTKNINHTKASKLSKPNGLIRQATLPSLTGTTSTRKETAKQLVMREKSFTDKRT 439
+N + + + + A K + PN + A + + + +++ E +Q+++RE+ DK
Sbjct: 95 LNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMA 154
Query: 440 GKI 442
++
Sbjct: 155 DEV 157
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.124 0.336
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,166
Number of Sequences: 5004
Number of extensions: 69883
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 16
length of query: 468
length of database: 2,362,478
effective HSP length: 75
effective length of query: 393
effective length of database: 1,987,178
effective search space: 780960954
effective search space used: 780960954
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
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