Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000799-TA|BGIBMGA000799-PA|undefined
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34540.1 68415.m04243 expressed protein 36 0.076
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 33 0.31
At3g26940.1 68416.m03373 protein kinase family protein contains ... 32 0.71
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 32 0.71
At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20, ... 30 2.9
At2g36560.1 68415.m04484 DNA-binding protein-related contains Pf... 30 3.8
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 30 3.8
At5g46280.1 68418.m05697 DNA replication licensing factor, putat... 29 5.0
At3g54190.1 68416.m05990 expressed protein GTP-binding regulator... 29 5.0
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 29 5.0
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 5.0
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 29 6.6
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 6.6
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 29 8.7
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 8.7
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 8.7
At3g52920.2 68416.m05833 expressed protein weak similarity to en... 29 8.7
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 8.7
>At2g34540.1 68415.m04243 expressed protein
Length = 271
Score = 35.5 bits (78), Expect = 0.076
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 256 FSASAKLSELFTPQRVVTPSKPKPNSQ-FNRTKLPNFAALHQKQFDKMESLDECQERKAK 314
F A L LF ++ +KP P+ + FN KLP+ + KME++ + +E K +
Sbjct: 132 FPAKFALRSLFEVSSMLASAKPIPSQKPFNLHKLPSLPSKDDIDSIKMEAVRKMKEGKCE 191
Query: 315 RAKQLL 320
A QLL
Sbjct: 192 EAVQLL 197
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 33.5 bits (73), Expect = 0.31
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 27 RSERKVRNKLLNGNTDGSCINVIKCKKRSNYVRYPTDDEQHSADNDLDGIETKQSRSTRK 86
+S +KVR LL + + K + + ++R TDDE A ++ E +QS+ RK
Sbjct: 240 KSAKKVRTLLLPSVNVFNAQPLEKSSRNAKHIRLDTDDETFDAYHN-KSAEEEQSKEDRK 298
Query: 87 NTLKDRNTISVNNE-NTESFDAKKHVXXXXXXKKASESSIENVPVTENMYKREEH 140
+ S E N E +KK K S ++++ V K+EEH
Sbjct: 299 RKKSSKRNKSEEEEVNNEDHKSKK-------KKSKSNTNVDQVETK----KKEEH 342
>At3g26940.1 68416.m03373 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 432
Score = 32.3 bits (70), Expect = 0.71
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 22 VDITVRSERKVRNKLLNGNTDGS 44
+D T+R ER+ R +LL GN DG+
Sbjct: 355 IDHTIRKERRTRRRLLGGNKDGA 377
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 32.3 bits (70), Expect = 0.71
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 19 KDDVDITVRSER-KVRNKLLNGNTDGSCINVIKCKKRSNYVRYPTDDEQHSADNDLDGIE 77
K V + +S++ K R + +G +D S + ++ S +VR +E ++++ + +
Sbjct: 112 KSSVSESRKSDKGKKRFRKKSGQSDESD-GEVAVREDSRHVRRKVSEEDDGSESEEERVR 170
Query: 78 TKQSRSTRKNTLKDRNTISVNNENTESFDAKKH---VXXXXXXKKASESSIENVPVTENM 134
++ R + LKDR+T ++ K+ V +K S+ V E +
Sbjct: 171 DQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRKVSRQEYL 230
Query: 135 YKREE 139
KRE+
Sbjct: 231 KKREQ 235
>At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20,
putative contains Pfam profile: PF01649 ribosomal
protein S20
Length = 202
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 219 SRSTARKRSYTQSDAEDARAKRKRVTETAVEPARKRTFSASAKLSELFTPQRVV 272
+R ++R Y +S +AR + K+V E A+E +K+T A+ E+ T ++++
Sbjct: 94 ARQAEKRRVYNKSKKSEARTRMKKVLE-ALEGLKKKT---DAQADEIVTVEKLI 143
>At2g36560.1 68415.m04484 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 574
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 235 DARAKRKRVTETAVEPARKRTFSASAKLSELFTPQRVVTPSKPKPNSQFNRT 286
++R KRK V++ V P+ AS+ + P+ V K NS+ NRT
Sbjct: 228 NSRQKRKYVSKAMVAPSITPNLVASSSTRPVQQPEMVGPSHSQKRNSESNRT 279
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 29.9 bits (64), Expect = 3.8
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 62 TDDEQHSADNDLDGIETK--QSRSTRKNTLKDRNTISVNNENTESFDAKKHVXXXXXXKK 119
TD++ +D + +E K Q R +K LK +++ S +EN+E + +H+ KK
Sbjct: 557 TDEDDVYVSSDDEEMEKKLLQQRLYKKMELKAKSSSSTADENSE--EILRHIKKPEIKKK 614
Query: 120 ASESSIENVPVTE 132
A SS + + E
Sbjct: 615 AKPSSFKERALME 627
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
similar to SP|Q43704 DNA replication licensing factor
MCM3 homolog (Replication origin activator) (ROA
protein) {Zea mays}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 776
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 287 KLPNFAALHQKQFDKMESLDECQERKAKRAKQLLTPTGSVG 327
KL NFA HQ + +M+ ++ +ER+ ++A+Q TP+G G
Sbjct: 628 KLMNFAIYHQ-ELTEMDDREQ-EERQREQAEQERTPSGRRG 666
>At3g54190.1 68416.m05990 expressed protein GTP-binding regulatory
protein beta chain, Dictyostelium discoideum, PIR:A47370
Length = 467
Score = 29.5 bits (63), Expect = 5.0
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 13 SNDSTVKDDVDITVR-SERKVRNKLLNGNTDGSCINVI---KCKKRSNYVRYPTDDEQHS 68
+N+ + D D+ + + ++ + GN I+ I KC + P D++ S
Sbjct: 359 TNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKDDESS 418
Query: 69 ADNDLDGIETKQSRSTRKNTLKDRNTISVNNENTESFDAKKH 110
+ N + G +KQ R+ L+D + + E E + +H
Sbjct: 419 SSNCM-GKNSKQRRNAVAEALEDITALFYDEERNEIYTGNRH 459
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 248 VEPARKRTFSASAKLSELFTPQRVVTPSKPKPNSQFNRTKLPNFAALHQKQFDKMESLDE 307
VE KR + +L + P R K N+ P + + +K+ + E+LD
Sbjct: 93 VEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDT 152
Query: 308 CQERKAKRAKQLLTPTGSVGVSEKI 332
E+ ++ + + VG SEK+
Sbjct: 153 FNEKNREKVQLITKLMELVGESEKL 177
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584,
Hic-5 [Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 34 NKLLNGNTDGSCINVIKCKKRSNYVRYPT---DDEQHSADNDLDGIE---TKQSRSTRKN 87
NK+ G+ + K Y YPT DDE +AD D D E T++ ++ N
Sbjct: 5 NKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPSTSEDN 64
Query: 88 TLKDRNTISVN 98
T D+ ++
Sbjct: 65 TSNDQENEDID 75
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 29.1 bits (62), Expect = 6.6
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 374 FKLNMDINPFCVP--TKNINH 392
F+ N+ +P+CVP TKNINH
Sbjct: 41 FRCNIKWHPYCVPRSTKNINH 61
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 32 VRNKLLNGNTDGSCINVIKCKKRSNYVRYPTDDEQHSADNDLDGIETKQSRSTRKNTLKD 91
+ N++ NG D + K + RS+ R D++ D D DG +K+SRS ++ +D
Sbjct: 18 LENEVGNGGGDEKVKSEGKERSRSSRHR---GDKKKERDEDEDGRRSKRSRSHHRSRSRD 74
Query: 92 R 92
R
Sbjct: 75 R 75
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 28.7 bits (61), Expect = 8.7
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 50 KCKKRSNYVRYPTDDEQHSADNDLDGIETKQSRSTRKNTLKDRNTISVNNEN---TESFD 106
K KK+ V D+E D+D D IET +N++ + ++ ++ T SF
Sbjct: 202 KGKKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDSSYAPDKEDTATASFV 261
Query: 107 AKKHVXXXXXXKKASESSIEN 127
K K+ + I+N
Sbjct: 262 KPKVANKVANLKRKVDPMIKN 282
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 28.7 bits (61), Expect = 8.7
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 219 SRSTARKRSYTQSDAEDARAKRKRVTETAVEP-ARKRTFSASAKLSELFTPQRVVTPSKP 277
SRS +R RSY++S + R K V + + P A +R+ S + L +P R V + P
Sbjct: 170 SRSYSRGRSYSRSRSPVRR--EKSVEDRSRSPKAMERSVSPKGRDQSL-SPDRKVIDASP 226
Query: 278 KPNSQFNRTKLPN 290
K S ++ + N
Sbjct: 227 KRGSDYDGSPKEN 239
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 28.7 bits (61), Expect = 8.7
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 219 SRSTARKRSYTQSDAEDARAKRKRVTETAVEP-ARKRTFSASAKLSELFTPQRVVTPSKP 277
SRS +R RSY++S + R K V + + P A +R+ S + L +P R V + P
Sbjct: 129 SRSYSRGRSYSRSRSPVRR--EKSVEDRSRSPKAMERSVSPKGRDQSL-SPDRKVIDASP 185
Query: 278 KPNSQFNRTKLPN 290
K S ++ + N
Sbjct: 186 KRGSDYDGSPKEN 198
>At3g52920.2 68416.m05833 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 177
Score = 28.7 bits (61), Expect = 8.7
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 248 VEPARKRTFSASAKLSELFTPQRVVTPSKPKPNSQFNRTKLPNFAALHQKQFDKMESLDE 307
VE +R S +L + P R K N+ P + + +K+ + E+LD
Sbjct: 64 VEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDT 123
Query: 308 CQERKAKRAKQLLTPTGSVGVSEKISPK 335
E+ ++ + + VG SEK+ K
Sbjct: 124 FNEKNREKVQLITKLMELVGESEKLRLK 151
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.7 bits (61), Expect = 8.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 63 DDEQHSADNDLDGIETKQSRSTRKNTLKDRNTISVNNENTESFDAKKHVXXXXXXKKASE 122
++E+H +D D + E + + ++ + RNT V N + ++ +KH+ KK ++
Sbjct: 117 NNEEHGSDEDSERGEAVEESDSSEDEVPSRNT--VGNVPLKWYEDEKHIGYDLTGKKITK 174
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.124 0.336
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,219
Number of Sequences: 28952
Number of extensions: 336545
Number of successful extensions: 953
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 18
length of query: 468
length of database: 12,070,560
effective HSP length: 84
effective length of query: 384
effective length of database: 9,638,592
effective search space: 3701219328
effective search space used: 3701219328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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