Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000798-TA|BGIBMGA000798-PA|IPR004088|KH, type 1,
IPR004087|KH
(149 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 81 3e-16
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 44 7e-05
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 40 6e-04
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 38 0.005
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.074
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.098
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3) 28 2.8
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 356
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 58 QPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQ 117
Q + + + + ++GAILG GG+++ E Q SGA IQ+S+KG F PGT NR V I+G
Sbjct: 269 QSSATLEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKGEFVPGTSNRKVVITGDV 328
Query: 118 TAISNAHYLIEQKIQEEELKR--TRHNA 143
A AH+L+ Q+IQ+ E +R T H A
Sbjct: 329 PAAQLAHFLVTQRIQQVEAERLLTPHRA 356
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQ 132
G+I+G GG+++ ++QQ +GA I++S + PGT+ RI I G I + KI+
Sbjct: 24 GSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIR 83
Query: 133 EE 134
+E
Sbjct: 84 QE 85
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 56 DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
D + + + G I+G G ++ I + +GA IQIS+K + RIV + G
Sbjct: 98 DRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAESV-AGERIVCVGG 156
Query: 116 SQTAISNAHYLIEQKIQEE 134
S ++ A +I K+ E+
Sbjct: 157 SPEQVTAACVIITSKVPED 175
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 65 VEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAH 124
+ + +VG ++G GG ++ IQ SGA +Q + P + +R+ T+ GSQ I
Sbjct: 217 IPVPRDVVGFVIGKGGETIKRIQAESGARVQFN-PAKDNPNSSDRMATVQGSQEQIQKVE 275
Query: 125 YLIEQKIQEEEL 136
+I + I + E+
Sbjct: 276 KIINEIISQVEV 287
Score = 34.3 bits (75), Expect = 0.042
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQ 132
G I+G GG ++ +I +SGA++++++ + I G+ I A +I +KI
Sbjct: 338 GLIIGKGGETIKQIIAVSGAHVELNR--NVPENNPTKFFVIRGTDQQIQQAEKMINEKIS 395
Query: 133 EE 134
++
Sbjct: 396 DQ 397
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 43.6 bits (98), Expect = 7e-05
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 59 PKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQT 118
P S + I + VG+I+G G + I+QMSGA+I+I G G R V I+G+
Sbjct: 190 PITSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKI---GDSENGDDKREVLITGTAE 246
Query: 119 AISNAHYLIEQKIQEEE 135
A+ A +LI + ++E+
Sbjct: 247 AVGLAQFLINARNEDEK 263
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRI 110
G+I+G GG + EI+++SGA++ +G P T +++
Sbjct: 101 GSIIGKGGAKIKEIREVSGASVVFPPRGHPMPYTPHKL 138
Score = 30.7 bits (66), Expect = 0.52
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 86 IQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKRTRHN 142
+Q S A+I IS T RIV+++G++ A+ A LI QK+++E ++ N
Sbjct: 33 MQGKSNAHINISDGST-----PERIVSVTGTKDAVVTAFALIGQKLEDELKSNSKSN 84
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 40.3 bits (90), Expect = 6e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
SK + ++ +V I+G G ++ I++ +GA+I I + G + I+TI G A
Sbjct: 911 SKKMSVSSSVVSRIIGRAGCNVNAIRETTGAHIDIDTSRQKSTG--SCIITIKGPADATR 968
Query: 122 NAHYLIEQKIQEEE 135
AH+LI I++ E
Sbjct: 969 QAHHLISALIKDPE 982
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
S V I + + G+I+G GG + I+ A I+I PG+ +RI+TI+G+Q I+
Sbjct: 322 STQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDP---LPGSNDRIITITGNQEQIN 378
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 33.5 bits (73), Expect = 0.074
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 75 ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
++G GGRS+ I+ SGA IQI + + GT+ +
Sbjct: 410 VIGEGGRSINSIRSQSGARIQIKEDKAYIRGTQEQ 444
>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 33.1 bits (72), Expect = 0.098
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 61 DSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
+ + VE+ E +G ++G GG + I Q +GA I + GT+N+
Sbjct: 296 EPETVELKESQIGMVIGKGGNRINSIGQETGAKIYVKDCKAHIMGTKNQ 344
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 30.7 bits (66), Expect = 0.52
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 59 PKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
P+D +N E+ +G ++GP G +L +++ + A I I KG+ G + R
Sbjct: 108 PQD-ENPEVN--FIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGR 155
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 66 EIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
E+ ++I G + PG +++ S SK G PG++ +V I G
Sbjct: 3120 EVTKLIDGTLRQPGSSRRIDLALESADRDLFSKSGGARPGSQRILVVIMG 3169
>SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)
Length = 360
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 103 APGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKR--TRHNAI 144
AP ++N + I + + + AH+ ++Q +EE+++ T HNA+
Sbjct: 95 APKSKNPLSDILRTDSKLQAAHFGLQQHELQEEIRKQITEHNAL 138
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 75 ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
I+G GG ++ ++ Q +G +I + ++ V+I+G + +A I + +
Sbjct: 356 IIGKGGYNIKKVMQDTGCHIHFPDSNRGSSSEKSNQVSIAGQPLGVESARLHIREML 412
>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGT 101
VG +LGP G + +Q +G + I KG+
Sbjct: 118 VGKLLGPRGNTFKRLQNSTGTKMSILGKGS 147
>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1494
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 109 RIVTISGSQ-TAISNAHYLIEQKIQEEELKRTRHNAIST 146
RI TIS ++ T +N HY + +Q+ L TR IST
Sbjct: 572 RITTISTTRYTVYNNQHYTLHG-VQQSALHATRSTTIST 609
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQIS-----KKGTFAPG--TRNRIVTIS 114
S +++ + G I+G GG ++ +IQ+ +G I K+ F R + I
Sbjct: 57 SLELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKDFGANRTPSERTIVIK 116
Query: 115 GSQTAISNAHYLIEQKIQEEELKRTRHNAI 144
G + A +I++ + E+ + T I
Sbjct: 117 GEREKARKAELIIKKIVAEQPRQLTEEYLI 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,923,158
Number of Sequences: 59808
Number of extensions: 119117
Number of successful extensions: 210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 32
length of query: 149
length of database: 16,821,457
effective HSP length: 76
effective length of query: 73
effective length of database: 12,276,049
effective search space: 896151577
effective search space used: 896151577
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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