Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000798-TA|BGIBMGA000798-PA|IPR004088|KH, type 1,
IPR004087|KH
(149 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 69 2e-12
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 69 2e-12
At2g25970.1 68415.m03117 KH domain-containing protein 53 7e-08
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 46 1e-05
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 43 1e-04
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 37 0.005
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 37 0.005
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.026
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.026
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 34 0.035
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 34 0.035
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 33 0.080
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 33 0.080
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 33 0.080
At2g22600.1 68415.m02679 KH domain-containing protein 33 0.080
At5g53060.1 68418.m06592 KH domain-containing protein 33 0.11
At3g08620.1 68416.m01001 KH domain-containing protein 32 0.14
At1g51580.1 68414.m05806 KH domain-containing protein 32 0.14
At2g38610.2 68415.m04743 KH domain-containing protein 31 0.24
At2g38610.1 68415.m04742 KH domain-containing protein 31 0.24
At1g14170.1 68414.m01675 KH domain-containing protein location o... 30 0.57
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 30 0.75
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 30 0.75
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami... 28 3.0
At1g22220.1 68414.m02778 F-box family protein contains F-box dom... 27 4.0
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 27 5.3
At5g04760.1 68418.m00490 myb family transcription factor contain... 27 5.3
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 27 5.3
At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 fami... 27 7.0
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 27 7.0
At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 fami... 27 7.0
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 26 9.2
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 65 VEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAH 124
+ +A+ +G +LG GGR+++EI QM+GA I+IS +G F GT +R V+I+G Q AI A
Sbjct: 259 IGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAE 318
Query: 125 YLIEQKIQEEELKRT 139
+I+QK+ + T
Sbjct: 319 TMIKQKVDSATERTT 333
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 67 IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYL 126
++ G+++G GG ++ E Q SGA IQ+S+ F PGT +RI+ ISGS + N L
Sbjct: 41 VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100
Query: 127 IEQKIQEE 134
I K+ E
Sbjct: 101 ILDKLHSE 108
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 56 DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
+ +P+ + + G I+G GG ++ + S A I+IS G +R+VT+SG
Sbjct: 116 EVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSG 175
Query: 116 SQTAISNAHYLIEQKIQEEE 135
+ A LI K+ E++
Sbjct: 176 TFEEQMRAIDLILAKLTEDD 195
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 65 VEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAH 124
+ +A+ +G +LG GGR+++EI QM+GA I+IS +G F GT +R V+I+G Q AI A
Sbjct: 238 IGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAE 297
Query: 125 YLIEQKIQEEELKRT 139
+I+QK+ + T
Sbjct: 298 TMIKQKVDSATERTT 312
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 67 IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYL 126
++ G+++G GG ++ E Q SGA IQ+S+ F PGT +RI+ ISGS + N L
Sbjct: 41 VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100
Query: 127 IEQKIQEE 134
I K+ E
Sbjct: 101 ILDKLHSE 108
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 56 DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
+ +P+ + + G I+G GG ++ + S A I+IS G +R+VT+SG
Sbjct: 116 EVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSG 175
Query: 116 SQTAISNAHYLIEQKIQEEE 135
+ A LI K+ E++
Sbjct: 176 TFEEQMRAIDLILAKLTEDD 195
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 53.2 bits (122), Expect = 7e-08
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
+K ++I + VG I+G GG ++ +Q SGA IQ+++ P R V ++G+ IS
Sbjct: 135 TKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQIS 194
Query: 122 NAHYLIEQKIQEEELKRT 139
A LI +QE E T
Sbjct: 195 KAEQLITDVLQEAEAGNT 212
Score = 34.7 bits (76), Expect = 0.026
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPG--TRNRIVTISGSQTAISNAHYLIEQ 129
VG I+G GG ++ +Q +GA IQ+ PG T R + I G I +A L+ +
Sbjct: 241 VGLIIGKGGETIKSMQAKTGARIQVIPL-HLPPGDPTPERTLQIDGITEQIEHAKQLVNE 299
Query: 130 KIQEEELKRTRHNAI 144
I E R R++A+
Sbjct: 300 IISGE--NRMRNSAM 312
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 56 DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
D ++ +++ VG ++G GG ++ +Q SGA IQI + P + R V I G
Sbjct: 171 DGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIG 230
Query: 116 SQTAISNAHYLIEQKIQEEE 135
S I +A LI I E E
Sbjct: 231 SVACIESAEKLISAVIAEAE 250
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
VG I+G GG ++ +Q SGA Q+ + G + R V ISG + I A +I+ +
Sbjct: 283 VGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIATDMIKDVM 342
Query: 132 QE 133
+
Sbjct: 343 NQ 344
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 56 DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
D ++ +++ VG ++G GG + +Q SGA IQI + P + R V I G
Sbjct: 227 DDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIG 286
Query: 116 SQTAISNAHYLIEQKIQEEE 135
+ + I A LI I E E
Sbjct: 287 TVSCIEKAEKLINAVIAEVE 306
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 10/81 (12%)
Query: 60 KDSKNVE----IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
+D++NV+ ++ ++G ++G G + EI++ + ANI ISK G ++ +V +SG
Sbjct: 390 EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSG 443
Query: 116 SQTAISNAHYLIEQKIQEEEL 136
+++ +A I +++E+ L
Sbjct: 444 EVSSVRDALIQIVLRLREDVL 464
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 75 ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 128
++G GG +L I+++SGA I+IS T + I +SG+ + A L++
Sbjct: 550 VMGKGGGNLENIRRISGAMIEISASKT---SHGDHIALLSGTLEQMRCAENLVQ 600
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 10/81 (12%)
Query: 60 KDSKNVE----IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
+D++NV+ ++ ++G ++G G + EI++ + ANI ISK G ++ +V +SG
Sbjct: 390 EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSG 443
Query: 116 SQTAISNAHYLIEQKIQEEEL 136
+++ +A I +++E+ L
Sbjct: 444 EVSSVRDALIQIVLRLREDVL 464
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.026
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
+G I+GP G + +++ +GA I I KG+ G + + + + H L+E +
Sbjct: 258 IGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDPSENEDLHVLVEAET 317
Query: 132 QE 133
QE
Sbjct: 318 QE 319
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.026
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
+G I+GP G + +++ +GA I I KG+ G + + + + H L+E +
Sbjct: 258 IGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDPSENEDLHVLVEAET 317
Query: 132 QE 133
QE
Sbjct: 318 QE 319
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 34.3 bits (75), Expect = 0.035
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTF--APGTRNRIVTISGSQTAISNAHYLIEQ 129
+G ILG GG + E+++M+ ANI+I K + +V ISG A I
Sbjct: 381 IGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITS 440
Query: 130 KIQEEELKRTRHNAISTLM 148
+++ R A+S LM
Sbjct: 441 RLRANVF--DREGAVSALM 457
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRN--RIVTISGSQTAISNAHYLIEQ 129
+G ILG GG+ + I+ +GA I+I K N ++ ISG + A I
Sbjct: 158 IGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIAS 217
Query: 130 KIQE 133
++ E
Sbjct: 218 RLHE 221
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 34.3 bits (75), Expect = 0.035
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTF--APGTRNRIVTISGSQTAISNAHYLIEQ 129
+G ILG GG + E+++M+ ANI+I K + +V ISG A I
Sbjct: 381 IGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITS 440
Query: 130 KIQEEELKRTRHNAISTLM 148
+++ R A+S LM
Sbjct: 441 RLRANVF--DREGAVSALM 457
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRN--RIVTISGSQTAISNAHYLIEQ 129
+G ILG GG+ + I+ +GA I+I K N ++ ISG + A I
Sbjct: 158 IGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIAS 217
Query: 130 KIQE 133
++ E
Sbjct: 218 RLHE 221
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 33.1 bits (72), Expect = 0.080
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISK--KGTFAPGTRNRIVTISGSQTAISNAHYLIEQ 129
+G +LG GG + E+++ +GA IQI K + +++V I+G + A + I
Sbjct: 553 IGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITS 612
Query: 130 KIQEEELKRTRHNAIS 145
++++ + N+++
Sbjct: 613 RLRDSVFSNSMKNSLA 628
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTI 113
VGA++G G + ++QQ +GA I++ + + G+ +R++TI
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRVEEPPS---GSPDRVITI 96
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKG-TFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
GA++G GG+ + I++ +G I I + T + +V + G+ A+ A I + +
Sbjct: 162 GAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCL 221
Query: 132 Q 132
Q
Sbjct: 222 Q 222
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 33.1 bits (72), Expect = 0.080
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISK--KGTFAPGTRNRIVTISGSQTAISNAHYLIEQ 129
+G +LG GG + E+++ +GA IQI K + +++V I+G + A + I
Sbjct: 553 IGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITS 612
Query: 130 KIQEEELKRTRHNAIS 145
++++ + N+++
Sbjct: 613 RLRDSVFSNSMKNSLA 628
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTI 113
VGA++G G + ++QQ +GA I++ + + G+ +R++TI
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRVEEPPS---GSPDRVITI 96
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKG-TFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
GA++G GG+ + I++ +G I I + T + +V + G+ A+ A I + +
Sbjct: 162 GAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCL 221
Query: 132 Q 132
Q
Sbjct: 222 Q 222
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 33.1 bits (72), Expect = 0.080
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 67 IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAP---GTRNRIVTISGSQTAISNA 123
++ ++G I+G G + EI++ + A+I IS KG P + +V ISG + + +A
Sbjct: 405 VSSKVIGCIIGKSGSIISEIRKRTKADIHIS-KGNNTPKCADPNDELVEISGEVSNVRDA 463
Query: 124 HYLIEQKIQEEELK 137
I +++++ L+
Sbjct: 464 LIQIVLRLRDDVLR 477
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 65 VEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAH 124
V I VG ++G GG +L I+++SGA I+IS G R+ ISG+ A
Sbjct: 578 VRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGG---RVALISGTSEQKRTAE 634
Query: 125 YLIE 128
L +
Sbjct: 635 NLFQ 638
Score = 29.5 bits (63), Expect = 0.99
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN----AHYLI 127
+G ++G GG ++ I+Q SG++I+++ T VT + S + + A L+
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLL 387
Query: 128 EQKIQEEE 135
++KI +E+
Sbjct: 388 QEKINDED 395
>At2g22600.1 68415.m02679 KH domain-containing protein
Length = 632
Score = 33.1 bits (72), Expect = 0.080
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRN-RIVTISGSQTAISNAHYLIEQK 130
+GA+LG GG+++ +++ SGA I++ GT+N ++ I+G A+ A ++
Sbjct: 151 IGAVLGLGGKNVEWMRRNSGAMIRVLPPPIC--GTKNDELIQITGDVLAVKKALVMVSSY 208
Query: 131 IQ 132
IQ
Sbjct: 209 IQ 210
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
+G++ G G + +QQ+SGAN+ + P V ISG+ A LIE +
Sbjct: 575 LGSLYGRDGTGVDNLQQISGANVDVKD-----PTGTEATVLISGNPEQARTAMSLIESIL 629
Query: 132 QEE 134
++
Sbjct: 630 TDQ 632
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 67 IAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAP---GTRNRIVTISGSQTAISNA 123
++ + VG +LG GG+ + +++ + +I+I + + P IV I G A+ NA
Sbjct: 182 VSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNA 241
Query: 124 HYLIEQKIQEEELKRTRHN 142
++ +++E + R R N
Sbjct: 242 LAIVSSRLRESQ-HRDRSN 259
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFA-PGTRNRIVTISGSQTAISNAHYLIE 128
VG +LGP G SL ++ +G + I KG+ P ++ G + H LIE
Sbjct: 152 VGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIE 209
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKK--GTFAPGTRNRIVTISGSQTAISNAHYLIEQ 129
+G +LG GG + E+++ +GA+I++ K T + IV + G+ + +A + I
Sbjct: 371 IGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILC 430
Query: 130 KIQE 133
+++E
Sbjct: 431 RLRE 434
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
VG+++G GG + +Q SGA+I++S + RI+ IS + + H L + +
Sbjct: 287 VGSLIGKGGAVVRALQNESGASIKVSDP---THDSEERIIVISAREN-LERRHSLAQDGV 342
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 62 SKNVEIA--EVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 119
S NVEI + +G + G +L I+Q+SGAN+ + GT +V +SG+
Sbjct: 548 SANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDP---KAGTTEGLVVVSGTSDQ 604
Query: 120 ISNAHYLI 127
A L+
Sbjct: 605 AHFAQSLL 612
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGT--RNRIVTISGSQTAISNAHYLIEQ 129
V ++ GG+ + +I++ SGA ++IS P + ++ ++G +++ A L+
Sbjct: 159 VDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTN 218
Query: 130 KIQE 133
+QE
Sbjct: 219 CLQE 222
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 31.5 bits (68), Expect = 0.24
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFA-PGTRNRIVTISGSQTAISNAHYLIE 128
VG +LGP G SL ++ +G + I KG+ P +++ G + H LIE
Sbjct: 153 VGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIE 210
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 31.5 bits (68), Expect = 0.24
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFA-PGTRNRIVTISGSQTAISNAHYLIE 128
VG +LGP G SL ++ +G + I KG+ P +++ G + H LIE
Sbjct: 153 VGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIE 210
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 30.3 bits (65), Expect = 0.57
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG-----SQTAISNAHYL 126
VG ++G GG + +I+Q +GA I+++ T + I+ IS Q+ NA
Sbjct: 255 VGGVIGKGGGFINQIRQETGATIRVNTSET---DDDDCIIFISSKEFYEDQSPAVNAAIR 311
Query: 127 IEQKIQEEELKRTRHNAIST 146
++Q+ E+ K AIST
Sbjct: 312 LQQRCSEKVGKDANDLAIST 331
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTR--NRIVTISGSQTAISNA 123
+G ++G GG + E++ ++ ANI+I +K R +V I+GS A A
Sbjct: 340 IGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKA 393
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 73 GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 122
G+I+G GG +I+ + +N++I++ PG R+VT+ + +++
Sbjct: 31 GSIIGKGGEIAKQIRSETKSNMRINEA---LPGCEERVVTMYSTNEELNH 77
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTR-NRIVTISGSQTAISNAHYLIEQK 130
VG ILGP G SL ++ + + I +G+ + ++ G + H LIE +
Sbjct: 164 VGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAE 223
Query: 131 IQEEELKRTRHNAISTL 147
+ E+ + +A+ L
Sbjct: 224 LPEDIINSRLEHAVHFL 240
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTR-NRIVTISGSQTAISNAHYLIEQK 130
VG ILGP G SL ++ + + I +G+ + ++ G + H LIE +
Sbjct: 164 VGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAE 223
Query: 131 IQEEELKRTRHNAISTL 147
+ E+ + +A+ L
Sbjct: 224 LPEDIINSRLEHAVHFL 240
>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
protein low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 432
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 101 TFAPGTRNRIVTISGSQTA 119
+F PG+ NRIV ++GSQ++
Sbjct: 99 SFKPGSENRIVMVTGSQSS 117
>At1g22220.1 68414.m02778 F-box family protein contains F-box domain
Pfam:PF00646
Length = 314
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 102 FAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEE 135
F G + R+V + A S+ HYL+ + ++E E
Sbjct: 159 FVTGLKTRVVWTISALMAASSRHYLMREVVKEHE 192
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQI--SKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQ 129
+ +LG GR IQQ +GA I + ++ N++V ISG + A +
Sbjct: 405 INCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTS 464
Query: 130 KIQEEELKRT 139
++E+ + ++
Sbjct: 465 MLREDLINQS 474
>At5g04760.1 68418.m00490 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 215
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 99 KGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKRTRHNAISTL 147
KG + +RN +VT + +Q A Y + Q ++E KR+ + I+T+
Sbjct: 118 KGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTV 166
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 71 IVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQK 130
+ GAI+G GG S +I + +G + I P +N + + G+ IS A +++
Sbjct: 124 LAGAIIGKGGVSSKQICRQTGVKLSIQDHER-DPNLKN--IVLEGTLEQISEASAMVKDL 180
Query: 131 I 131
I
Sbjct: 181 I 181
>At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 family
protein other predicted proteins Arabidopsis thaliana
Length = 120
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 101 TFAPGTRNRIVTISGSQTA 119
+F PG+ NRI+ ++GSQ++
Sbjct: 40 SFKPGSENRILMVTGSQSS 58
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 26.6 bits (56), Expect = 7.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
S+ ++I I+G G ++ I++ SGA I I + +P V I G+ + +
Sbjct: 342 SQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKE----SPHPDQITVEIKGTTSQVQ 397
Query: 122 NAHYLIEQKI 131
A LI++ I
Sbjct: 398 TAEQLIQEFI 407
>At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 449
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 101 TFAPGTRNRIVTISGSQTA 119
+F PG NR V ++GSQ+A
Sbjct: 116 SFIPGAENRTVMVTGSQSA 134
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 62 SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
++ ++I A++G G ++ +++SGA + I ++ PG V +SG+ + +
Sbjct: 459 TQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTI-QETRGVPG--EMTVEVSGTGSQVQ 515
Query: 122 NAHYLIEQKIQE 133
A LI+ + E
Sbjct: 516 TAVQLIQNFMAE 527
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,975
Number of Sequences: 28952
Number of extensions: 91813
Number of successful extensions: 227
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 60
length of query: 149
length of database: 12,070,560
effective HSP length: 75
effective length of query: 74
effective length of database: 9,899,160
effective search space: 732537840
effective search space used: 732537840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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