Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000798-TA|BGIBMGA000798-PA|IPR004088|KH, type 1,
IPR004087|KH
(149 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 52 4e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 32 0.042
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.056
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 0.68
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 3.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 3.6
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 25 6.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 6.4
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 58 QPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQ 117
QPK ++N+ I +VG I+G GG + EI++ SG+ I I+K+ G R+ TI+G+
Sbjct: 318 QPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETG--ERMFTITGTH 375
Query: 118 TAISNAHYLIEQKIQEEELKRT 139
A +L+ Q+++ E+ +R+
Sbjct: 376 EENEKALFLLYQQLEMEKDRRS 397
Score = 24.6 bits (51), Expect = 6.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 55 ADAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTIS 114
+DA + IA ++G+I+G G + IQ + SK P + R V I
Sbjct: 173 SDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASK--DMLPQSTERTVEIH 230
Query: 115 GSQTAISNAHYLI 127
G+ + N H I
Sbjct: 231 GT---VDNLHAAI 240
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.9 bits (69), Expect = 0.042
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 72 VGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGS 116
+G ++GP G +L +++ SGA I I KG+ G ++ G+
Sbjct: 203 IGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGN 247
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 31.5 bits (68), Expect = 0.056
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 60 KDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFA 103
+++K + +VGAI+G G++L I + IQI K+ A
Sbjct: 224 RETKTMPCPVFVVGAIIGTNGQNLKSIMDRTSTRIQIPKRNNTA 267
Score = 29.9 bits (64), Expect = 0.17
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 75 ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEE 134
I+G GG + +I++++ I + + PG + IV + GS+ + A LI +++QE
Sbjct: 1222 IIGSGGSIINKIRKIAQVKIDVPR----TPG--DEIVVVQGSRAGVVKAKDLIFERLQEN 1275
Query: 135 E 135
+
Sbjct: 1276 Q 1276
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 0.68
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 107 RNRIVTISGS-QTAISNAHYLIEQKIQEEELKRTRHNAISTL 147
+N+I+ + G ++A L+E+ I EE L+R HN I L
Sbjct: 429 KNKIIELEGILKSANVERDGLVEKLIAEETLRRKLHNTIQEL 470
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 101 TFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEELK 137
+ AP +NRI + G Q Y QK+ + E K
Sbjct: 86 SLAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETK 122
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 74 AILGPGGRSLVEIQQMSGANIQISKKGT-FAPGTRNR 109
AI+GP G + IQQ + +QI +G+ F + NR
Sbjct: 308 AIVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNR 344
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 6.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 75 ILGPGGRSLVEIQQMSGA 92
IL PGG SL EIQ GA
Sbjct: 243 ILRPGGISLEEIQSSGGA 260
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 24.6 bits (51), Expect = 6.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 68 AEVIVGAI--LGPGGRSLVEIQQMSGANIQISKKGTFA---PGTRNRIVTISGSQTAISN 122
++ IV A+ GPG +++ Q+ ++K+ + PGT VT+ +T + N
Sbjct: 355 SQKIVNALEPFGPG-EYILDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLEN 413
Query: 123 AH 124
H
Sbjct: 414 TH 415
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,194
Number of Sequences: 5004
Number of extensions: 15240
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 149
length of database: 2,362,478
effective HSP length: 67
effective length of query: 82
effective length of database: 2,027,210
effective search space: 166231220
effective search space used: 166231220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)
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