GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000798-TA|BGIBMGA000798-PA|IPR004088|KH, type 1,
IPR004087|KH
         (149 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        81   3e-16
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)                   44   7e-05
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         40   6e-04
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)                   38   0.005
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.074
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.098
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.52 
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)                      28   2.8  
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 58  QPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQ 117
           Q   +  + + + ++GAILG GG+++ E  Q SGA IQ+S+KG F PGT NR V I+G  
Sbjct: 269 QSSATLEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKGEFVPGTSNRKVVITGDV 328

Query: 118 TAISNAHYLIEQKIQEEELKR--TRHNA 143
            A   AH+L+ Q+IQ+ E +R  T H A
Sbjct: 329 PAAQLAHFLVTQRIQQVEAERLLTPHRA 356



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 73  GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQ 132
           G+I+G GG+++ ++QQ +GA I++S    + PGT+ RI  I G    I      +  KI+
Sbjct: 24  GSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIR 83

Query: 133 EE 134
           +E
Sbjct: 84  QE 85



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 56  DAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
           D +      + +     G I+G  G ++  I + +GA IQIS+K   +     RIV + G
Sbjct: 98  DRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAESV-AGERIVCVGG 156

Query: 116 SQTAISNAHYLIEQKIQEE 134
           S   ++ A  +I  K+ E+
Sbjct: 157 SPEQVTAACVIITSKVPED 175


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 65  VEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAH 124
           + +   +VG ++G GG ++  IQ  SGA +Q +      P + +R+ T+ GSQ  I    
Sbjct: 217 IPVPRDVVGFVIGKGGETIKRIQAESGARVQFN-PAKDNPNSSDRMATVQGSQEQIQKVE 275

Query: 125 YLIEQKIQEEEL 136
            +I + I + E+
Sbjct: 276 KIINEIISQVEV 287



 Score = 34.3 bits (75), Expect = 0.042
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 73  GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQ 132
           G I+G GG ++ +I  +SGA++++++          +   I G+   I  A  +I +KI 
Sbjct: 338 GLIIGKGGETIKQIIAVSGAHVELNR--NVPENNPTKFFVIRGTDQQIQQAEKMINEKIS 395

Query: 133 EE 134
           ++
Sbjct: 396 DQ 397


>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
          Length = 379

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 59  PKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQT 118
           P  S  + I +  VG+I+G  G  +  I+QMSGA+I+I   G    G   R V I+G+  
Sbjct: 190 PITSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKI---GDSENGDDKREVLITGTAE 246

Query: 119 AISNAHYLIEQKIQEEE 135
           A+  A +LI  + ++E+
Sbjct: 247 AVGLAQFLINARNEDEK 263



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 73  GAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRI 110
           G+I+G GG  + EI+++SGA++    +G   P T +++
Sbjct: 101 GSIIGKGGAKIKEIREVSGASVVFPPRGHPMPYTPHKL 138



 Score = 30.7 bits (66), Expect = 0.52
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 86  IQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKRTRHN 142
           +Q  S A+I IS   T       RIV+++G++ A+  A  LI QK+++E    ++ N
Sbjct: 33  MQGKSNAHINISDGST-----PERIVSVTGTKDAVVTAFALIGQKLEDELKSNSKSN 84


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 62  SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
           SK + ++  +V  I+G  G ++  I++ +GA+I I      + G  + I+TI G   A  
Sbjct: 911 SKKMSVSSSVVSRIIGRAGCNVNAIRETTGAHIDIDTSRQKSTG--SCIITIKGPADATR 968

Query: 122 NAHYLIEQKIQEEE 135
            AH+LI   I++ E
Sbjct: 969 QAHHLISALIKDPE 982


>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
          Length = 487

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 62  SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 121
           S  V I + + G+I+G GG  +  I+    A I+I       PG+ +RI+TI+G+Q  I+
Sbjct: 322 STQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDP---LPGSNDRIITITGNQEQIN 378


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 33.5 bits (73), Expect = 0.074
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 75  ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
           ++G GGRS+  I+  SGA IQI +   +  GT+ +
Sbjct: 410 VIGEGGRSINSIRSQSGARIQIKEDKAYIRGTQEQ 444


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 33.1 bits (72), Expect = 0.098
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 61  DSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
           + + VE+ E  +G ++G GG  +  I Q +GA I +        GT+N+
Sbjct: 296 EPETVELKESQIGMVIGKGGNRINSIGQETGAKIYVKDCKAHIMGTKNQ 344


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 59  PKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
           P+D +N E+    +G ++GP G +L  +++ + A I I  KG+   G + R
Sbjct: 108 PQD-ENPEVN--FIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGR 155


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 66   EIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISG 115
            E+ ++I G +  PG    +++   S      SK G   PG++  +V I G
Sbjct: 3120 EVTKLIDGTLRQPGSSRRIDLALESADRDLFSKSGGARPGSQRILVVIMG 3169


>SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)
          Length = 360

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 103 APGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKR--TRHNAI 144
           AP ++N +  I  + + +  AH+ ++Q   +EE+++  T HNA+
Sbjct: 95  APKSKNPLSDILRTDSKLQAAHFGLQQHELQEEIRKQITEHNAL 138


>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 75  ILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKI 131
           I+G GG ++ ++ Q +G +I        +   ++  V+I+G    + +A   I + +
Sbjct: 356 IIGKGGYNIKKVMQDTGCHIHFPDSNRGSSSEKSNQVSIAGQPLGVESARLHIREML 412


>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 72  VGAILGPGGRSLVEIQQMSGANIQISKKGT 101
           VG +LGP G +   +Q  +G  + I  KG+
Sbjct: 118 VGKLLGPRGNTFKRLQNSTGTKMSILGKGS 147


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 109 RIVTISGSQ-TAISNAHYLIEQKIQEEELKRTRHNAIST 146
           RI TIS ++ T  +N HY +   +Q+  L  TR   IST
Sbjct: 572 RITTISTTRYTVYNNQHYTLHG-VQQSALHATRSTTIST 609


>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 62  SKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQIS-----KKGTFAPG--TRNRIVTIS 114
           S  +++   + G I+G GG ++ +IQ+ +G  I        K+  F        R + I 
Sbjct: 57  SLELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKDFGANRTPSERTIVIK 116

Query: 115 GSQTAISNAHYLIEQKIQEEELKRTRHNAI 144
           G +     A  +I++ + E+  + T    I
Sbjct: 117 GEREKARKAELIIKKIVAEQPRQLTEEYLI 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,923,158
Number of Sequences: 59808
Number of extensions: 119117
Number of successful extensions: 210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 32
length of query: 149
length of database: 16,821,457
effective HSP length: 76
effective length of query: 73
effective length of database: 12,276,049
effective search space: 896151577
effective search space used: 896151577
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)