GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000798-TA|BGIBMGA000798-PA|IPR004088|KH, type 1,
IPR004087|KH
         (149 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   1.3  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              24   1.8  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 93  NIQISKKGTFAPGTRNRIVTISG 115
           N++I+ K TF P  + R VT+ G
Sbjct: 630 NLEIANKITFHPRIKTRSVTLDG 652


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 79  GGRSLVEIQQMSGANIQISKKGTFAPGTRNR 109
           G RS++E+QQ + A   ++ +G  A  +RNR
Sbjct: 183 GARSVIELQQQAAAAPMMTAQG--AHSSRNR 211


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,563
Number of Sequences: 2123
Number of extensions: 4060
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 149
length of database: 516,269
effective HSP length: 59
effective length of query: 90
effective length of database: 391,012
effective search space: 35191080
effective search space used: 35191080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)