Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000797-TA|BGIBMGA000797-PA|undefined
         (166 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   4.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   9.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 24  TPPSAPITQHTLDHIKGAL 42
           TPP AP+ Q+ L  I G +
Sbjct: 421 TPPEAPLFQNVLPPIGGMM 439


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 128 MPARAVLPLAYSGTSRLDFRILSHKLIRNRFYV 160
           +P    L LAY+  S LDF I         F+V
Sbjct: 163 LPELEDLDLAYNSISSLDFNIFDQVGSLGMFHV 195


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 88  PLPAQDPPAVFGPLAQVSLGLPLIGLNI 115
           PLP   PP +  P A       LI +N+
Sbjct: 184 PLPPIFPPTMINPSAICESAAQLIFMNV 211


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 22  PGTPPSAPITQHTLDHIKGALRQAGYS 48
           PG  P+    Q  L H +  L   GYS
Sbjct: 104 PGQSPAEKYDQQHLYHPQVLLSPGGYS 130


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,209
Number of Sequences: 317
Number of extensions: 1024
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 114,650
effective HSP length: 52
effective length of query: 114
effective length of database: 98,166
effective search space: 11190924
effective search space used: 11190924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)