GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000797-TA|BGIBMGA000797-PA|undefined
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    27   7.6  
04_04_1325 + 32666302-32667633                                         27   7.6  

>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 88  PLPAQDPPAVFGPLAQVSLGLPLIGLNIDPPRPRDDRN 125
           PLP    PA  GPL+Q+S    L+G +  PP P+  ++
Sbjct: 71  PLPLLPSPAS-GPLSQLSHSGLLVGPSPPPPPPQTQQS 107


>04_04_1325 + 32666302-32667633
          Length = 443

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 88  PLPAQDPPAVFGPLAQVSLGLPLIGLNIDP 117
           P  + +PPAV     Q    +P++ L+ DP
Sbjct: 126 PCASHEPPAVTPQWMQADTDIPIVALDFDP 155


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,274,819
Number of Sequences: 37544
Number of extensions: 159954
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 14,793,348
effective HSP length: 77
effective length of query: 89
effective length of database: 11,902,460
effective search space: 1059318940
effective search space used: 1059318940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)