GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000797-TA|BGIBMGA000797-PA|undefined
         (166 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               28   3.4  

>SB_24902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 116 DPPRPRDDRNTFMPARAVLPLAYSGTSRLD 145
           DPP+ R+ R TF   R VLP    G++  D
Sbjct: 6   DPPKYRERRPTFRSTRNVLPPKLEGSTTFD 35


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 88  PLPAQDPP--AVFGPLAQVSLGLPLIGLNIDPPRPRDDRNTFMPARAVLP 135
           PLP   PP  +   PL  + L LPL+ L + PP  R  + T +P  A  P
Sbjct: 635 PLPPTPPPRQSTPPPLLLIPL-LPLLTLPLPPPTVRHPQATPLPRLATHP 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,542,222
Number of Sequences: 59808
Number of extensions: 152890
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)