GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000797-TA|BGIBMGA000797-PA|undefined
         (166 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52590.1 68418.m06530 RabGAP/TBC domain-containing protein co...    27   6.4  
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si...    27   6.4  

>At5g52590.1 68418.m06530 RabGAP/TBC domain-containing protein
           contains similarity to SP|P48365 GTPase-activating
           protein GYP7 {Saccharomyces cerevisiae}; contains Pfam
           profile PF00566: TBC domain
          Length = 338

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 21  PPGTPPSAPITQHTL 35
           PPGTPPS P+   TL
Sbjct: 316 PPGTPPSLPLDDGTL 330


>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile PF01301
           : Glycosyl hydrolases family 35
          Length = 988

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 98  FGPLAQVSLGLPLIGLNIDPPRPR 121
           FGP + V + +PLIG    PP+PR
Sbjct: 830 FGPFSTVVVNVPLIG-GAAPPQPR 852


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,403
Number of Sequences: 28952
Number of extensions: 110119
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)