GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000796-TA|BGIBMGA000796-PA|IPR004088|KH, type 1,
IPR004087|KH
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    49   4e-07
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        32   0.046
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   2.3  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   3.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   4.0  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   4.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   7.0  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.0  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 5   ILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACL 64
           I +P    G IIG+GG+ I +I+  SGS + I+++  +    ER  T+ G  E N+KA  
Sbjct: 325 ISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHD-ETGERMFTITGTHEENEKALF 383

Query: 65  MILQKV 70
           ++ Q++
Sbjct: 384 LLYQQL 389



 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 3   VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
           ++ L+    AG+IIGK G  + +++  +     +++     ++ +R +T+ G  E+  +A
Sbjct: 96  LRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVP--NVHDRVLTISGPLENVVRA 153

Query: 63  CLMIL 67
              I+
Sbjct: 154 YRFII 158


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 31.9 bits (69), Expect = 0.046
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 4    KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERC-ITVVGEKESNKKA 62
            KI VP      IIG+ G+  + I+ ++ + + I      L  +E   IT+VG  E+ +KA
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNV---LDPEETVTITIVGSPENCEKA 1098

Query: 63   CLMILQKVVDD-PQSGSCPNVSYADV-AGPVANYNPTGSPYAVPTAEVKEV 111
              MI +KV     Q  + P+  Y  +  G +     +     V T E+K V
Sbjct: 1099 KEMIQEKVASQYTQMITVPDTVYESIMKGILMKKLRSDLKVFVDTPEIKPV 1149



 Score = 25.4 bits (53), Expect = 4.0
 Identities = 7/27 (25%), Positives = 18/27 (66%)

Query: 3   VKILVPNSTAGMIIGKGGNYIKQIKEQ 29
           +++ +PN     +IG  G Y+++++E+
Sbjct: 799 LRVNIPNDFHRQLIGSNGKYVRRLEEK 825



 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 8   PNSTAGMIIGKGGNYIKQIKEQSGSYVQISQK 39
           P    G IIG  G  +K I +++ + +QI ++
Sbjct: 232 PVFVVGAIIGTNGQNLKSIMDRTSTRIQIPKR 263


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 4   KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
           K+ VP+S    +     + + +I + + + + + +   + +  E+ I+VVG  E+N+ A 
Sbjct: 267 KMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEES--DSNSNEKFISVVGTSEANQSAL 324

Query: 64  LMILQKVV 71
           + +   ++
Sbjct: 325 MQLYAALI 332


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 17 GKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKK--ACLMILQKVVDDP 74
          GK    I  +  +  S +  SQ    +S +E+C T    +E NK+  +   I Q +  D 
Sbjct: 12 GKPKKVILSLSLKESSKINDSQNVSNVSSKEKCETEALLREENKENLSSDSIRQMIFGDE 71

Query: 75 -----QSGSCPNVSYADVAG 89
                +G  P  SYA + G
Sbjct: 72 MAGFVDTGEKPPCSYATLIG 91


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 16   IGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMI 66
            + K  NYI+Q       +V IS K +  S  E  + +  +++ N    L I
Sbjct: 1171 VTKIANYIRQHASSGFQFVVISLKNQLFSKSEALVGIYRDQQENSSRTLSI 1221


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 70  VVDDPQSGSCPNVSYADVAGPVANY 94
           V+ +P  GS P+++   +A PVA +
Sbjct: 282 VMSEPVHGSAPDIAGRGIANPVATF 306


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 32  SYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVDDPQSGSCPNVSYADVAGPV 91
           S  ++  ++KELSL+E+C+   G++       L+ LQ+  +D  +G+   ++  +V   +
Sbjct: 648 SAAKVCSESKELSLEEKCL---GDEIK-----LLQLQQTYEDQFTGNFVGLTVNEVVVKL 699

Query: 92  ANYNPT 97
              N T
Sbjct: 700 IQINQT 705


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 23  IKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVDDPQSGSCPNV 82
           +++I  + G    I  + + L  ++  I  +G+K        + LQK  D  Q    P  
Sbjct: 407 VERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVFQLDKLPVE 466

Query: 83  SYADVAG 89
           ++AD  G
Sbjct: 467 AFADSLG 473


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,377
Number of Sequences: 5004
Number of extensions: 21145
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)