Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000796-TA|BGIBMGA000796-PA|IPR004088|KH, type 1,
IPR004087|KH
(157 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 83 1e-16
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 7e-07
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 39 0.002
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 38 0.003
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 34 0.047
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 32 0.19
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 29 1.3
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05) 28 3.1
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 28 3.1
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 356
Score = 82.6 bits (195), Expect = 1e-16
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
+KI+VPNSTAGMIIGK G+ IK I EQ+G+ +QISQK E ER + V G E A
Sbjct: 105 MKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAESVAGERIVCVGGSPEQVTAA 164
Query: 63 CLMILQKVVDDPQSGSCPNVSYA 85
C++I KV +DP+ N+ Y+
Sbjct: 165 CVIITSKVPEDPEHALYNNIMYS 187
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
+KILVPN AG IIGKGG I Q+++ +G+ +++S + QER ++GE E+ +
Sbjct: 14 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQ 73
Query: 62 ACLMILQKVVDDPQ 75
++ K+ +PQ
Sbjct: 74 MLDFVIDKIRQEPQ 87
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
++I VP+ G I+GKGG I + + SG+ +Q+SQK + + R + + G+ + +
Sbjct: 274 LEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKGEFVPGTSNRKVVITGDVPAAQL 333
Query: 62 ACLMILQKV 70
A ++ Q++
Sbjct: 334 AHFLVTQRI 342
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 50.4 bits (115), Expect = 7e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQ----KAKELSL----QERCITVVG 54
+++ VP S +G+IIG+GG IK+I++++G+Y+ K K+ ER I + G
Sbjct: 58 LELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKDFGANRTPSERTIVIKG 117
Query: 55 EKESNKKACLMILQKVVDDPQ 75
E+E +KA L+I + V + P+
Sbjct: 118 EREKARKAELIIKKIVAEQPR 138
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
++I VP G +IGKGG IK+I+ +SG+ VQ + + +R TV G +E +K
Sbjct: 215 LEIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRMATVQGSQEQIQK- 273
Query: 63 CLMILQKVVDDPQSGSCPNVSYADVAGP 90
++K++++ S SY++ P
Sbjct: 274 ----VEKIINEIISQVEVCSSYSEFVNP 297
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 7 VPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMI 66
VP + G+IIGKGG IKQI SG++V++++ E + + + G + ++A MI
Sbjct: 332 VPGNKCGLIIGKGGETIKQIIAVSGAHVELNRNVPE-NNPTKFFVIRGTDQQIQQAEKMI 390
Query: 67 LQKVVD 72
+K+ D
Sbjct: 391 NEKISD 396
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYV 34
++++VP S G IIGKGG IK+I+E SG+ V
Sbjct: 91 LRLIVPGSQCGSIIGKGGAKIKEIREVSGASV 122
Score = 30.3 bits (65), Expect = 0.77
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 13 GMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVD 72
G IIG+ G+YI I++ SG+ ++I E +R + + G E+ A +I + D
Sbjct: 204 GSIIGQKGSYITGIRQMSGASIKIGD--SENGDDKREVLITGTAEAVGLAQFLINARNED 261
Query: 73 DPQ 75
+ Q
Sbjct: 262 EKQ 264
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
++ +P AG IIGKGG IK I+ + + ++I +R IT+ G +E
Sbjct: 324 QVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLP--GSNDRIITITGNQE 375
Score = 35.5 bits (78), Expect = 0.020
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
++IL+ + AG IIGKGG I++++ + + V + + + ER +T+ ++S
Sbjct: 55 LRILIQSKDAGGIIGKGGTNIRRLRTEYNAVVNV----PDTNSNERVLTITAPRQS---- 106
Query: 63 CLMILQKVVDDPQSGSCPNVSYADVAGPVANYNPTGSPYAVPTAEVKEVTHA 114
L IL +VV P+ G V Y + + GS ++KE+ A
Sbjct: 107 ALDILAEVV--PKIG---EVQYGHEIQMLVQRSQVGSIIGRAGYKIKEIREA 153
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGS 32
+++LV S G IIG+ G IK+I+E S +
Sbjct: 127 IQMLVQRSQVGSIIGRAGYKIKEIREASSA 156
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 34.3 bits (75), Expect = 0.047
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
K+ V +S IIG+ G + I+E +G+++ I +++ S IT+ G ++ ++A
Sbjct: 913 KMSVSSSVVSRIIGRAGCNVNAIRETTGAHIDI-DTSRQKSTGSCIITIKGPADATRQAH 971
Query: 64 LMILQKVVDDPQ 75
+I ++ DP+
Sbjct: 972 HLI-SALIKDPE 982
>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 32.7 bits (71), Expect = 0.14
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQ-ISQKAKELSLQERCITVVGEKESNKKA 62
+I P G +IG+ G +K I +QSG+ ++ I Q E+S R I++ G+ K A
Sbjct: 183 EIEFPQILCGRLIGRKGKNVKAISDQSGAKIRLIPQSPGEVS-THRIISLSGDSSQIKSA 241
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 32.3 bits (70), Expect = 0.19
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 2 FVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKK 61
F ++ +P + I G +IKEQ+G+ + I S+ + +TV GEK+ +
Sbjct: 266 FERLAIPKTFHPFISGPNNETANRIKEQTGAAINIPPP----SVNKDELTVAGEKDGVAQ 321
Query: 62 ACLMILQ 68
A MIL+
Sbjct: 322 AKAMILE 328
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 15 IIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVD 72
+IG+GG I++++E +G+ + + AK+ + IT++G++E+ + A +L+ + D
Sbjct: 748 LIGRGGASIRKVRENTGARI-VFPAAKD--EDKELITIIGKQEAVEAAKDELLKSIKD 802
>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 10 STAGMIIGKGGNYIKQIKEQSGSYVQI 36
S GM+IGKGGN I I +++G+ + +
Sbjct: 305 SQIGMVIGKGGNRINSIGQETGAKIYV 331
>SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 31.5 bits (68), Expect = 0.33
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 5 ILVPNSTAGMIIGKGGNYIKQIKEQSG-SYVQISQKAKELSLQERCITVVGEKESNKKAC 63
+ VP G +IGK G I+ I ++SG + V+I + + +E+ V + + K++
Sbjct: 212 VYVPKPLVGKVIGKNGRIIQDIVDRSGVTRVKIEPPDENQTPEEKQAKEVEQMKREKESL 271
Query: 64 LMILQKVVDDPQSG 77
LQ + P +G
Sbjct: 272 DHQLQNMGISPPTG 285
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 1 MFVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL 43
M V++ PN+ G +IG+GG+ I I +GS + Q+AK L
Sbjct: 520 MVVQLTAPNALCGRVIGRGGSKINSI---TGSNKSV-QRAKFL 558
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
+I +P GM+IGK G +++IK ++ I + + CI + G + +KA
Sbjct: 332 EIFIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKS------RHGCIILQGSRTDVQKAK 385
Query: 64 LMILQKVVDDPQ 75
MI + +V+ Q
Sbjct: 386 RMI-EDIVESIQ 396
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 15 IIGKGGNYIKQIKEQSGSYVQISQ-KAKELSLQER 48
+IG+GG I I+ QSG+ +QI + KA QE+
Sbjct: 410 VIGEGGRSINSIRSQSGARIQIKEDKAYIRGTQEQ 444
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 72 DDPQSGSCPNVSYADVAGPVA-NYNPTGSPYAVPTAEVKEVTHAH 115
DD Q G +++Y VAGP A + N + + +EVTH H
Sbjct: 1324 DDDQQGPNSDITYMIVAGPKAFSLNQVTGVLTLVSPLDREVTHRH 1368
>SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 27 KEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVDDP--QSGSCPNVSY 84
KE+S VQ+ +K K L++ + V+ KE N + DP Q N S+
Sbjct: 186 KERSVKLVQVLRKHKALAICDDVYNVIYFKEDNLPNGRLFSYDNKSDPNYQGNVISNASF 245
Query: 85 ADVAGP 90
+ + GP
Sbjct: 246 SKILGP 251
>SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05)
Length = 148
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSG-SYVQISQKAKELSLQERCITVVG 54
++ +P AG +IG G++ +K SG S V +S K ER + V+G
Sbjct: 93 RLAIPQKYAGAVIGTKGSFCNYMKTLSGASRVHVSPDDKS---GERYVEVIG 141
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 63 CLMILQKVVDDPQSGSCPN 81
C+ IL VDDPQSG P+
Sbjct: 1209 CISILHPPVDDPQSGELPS 1227
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQE-RCITVVGEKESNKK 61
+K+ V ++ IIGKGG IK++ + +G ++ + S ++ +++ G+ +
Sbjct: 344 LKMDVSHTDHSHIIGKGGYNIKKVMQDTGCHIHFPDSNRGSSSEKSNQVSIAGQPLGVES 403
Query: 62 ACLMI 66
A L I
Sbjct: 404 ARLHI 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,661
Number of Sequences: 59808
Number of extensions: 162274
Number of successful extensions: 281
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 31
length of query: 157
length of database: 16,821,457
effective HSP length: 76
effective length of query: 81
effective length of database: 12,276,049
effective search space: 994359969
effective search space used: 994359969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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