Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000796-TA|BGIBMGA000796-PA|IPR004088|KH, type 1,
IPR004087|KH
(157 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 58 4e-09
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 52 2e-07
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 47 7e-06
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 44 6e-05
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 44 6e-05
At2g25970.1 68415.m03117 KH domain-containing protein 43 1e-04
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 42 2e-04
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 42 2e-04
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 42 2e-04
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 42 3e-04
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 41 3e-04
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 41 3e-04
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 40 0.001
At1g14170.1 68414.m01675 KH domain-containing protein location o... 38 0.003
At5g53060.1 68418.m06592 KH domain-containing protein 38 0.004
At1g51580.1 68414.m05806 KH domain-containing protein 36 0.010
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 35 0.022
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 33 0.089
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 33 0.12
At2g22600.1 68415.m02679 KH domain-containing protein 32 0.16
At2g03110.1 68415.m00264 KH domain-containing protein 31 0.27
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 31 0.36
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi... 29 1.9
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi... 29 1.9
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi... 29 1.9
At3g44580.1 68416.m04791 hypothetical protein predicted protein,... 28 2.5
At2g38580.1 68415.m04739 expressed protein ; expression supporte... 28 2.5
At3g28790.1 68416.m03593 expressed protein 27 4.4
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 27 4.4
At2g19680.1 68415.m02300 mitochondrial ATP synthase g subunit fa... 27 4.4
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen... 27 4.4
At4g29210.1 68417.m04179 gamma-glutamyltranspeptidase family pro... 27 5.8
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 27 7.7
At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) simi... 27 7.7
At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) simi... 27 7.7
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 57.6 bits (133), Expect = 4e-09
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
++++VPNS+ G IIGKGG IK E+S + ++IS L +R +T+ G E +
Sbjct: 123 IRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMR 182
Query: 62 ACLMILQKVVDDPQSGSCPNVSYADVAG-PVANYNPTGS 99
A +IL K+ +D + Y+ AG NY P GS
Sbjct: 183 AIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGS 221
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
++ LV N+ AG +IGKGG+ I + + +SG+ +Q+S+ + +R I + G +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN 96
Query: 62 ACLMILQKV 70
+IL K+
Sbjct: 97 GLELILDKL 105
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELS-LQERCITVVGEKESNKK 61
V I V + G+++G+GG I +I + +G+ ++IS + +S +R +++ G + + ++
Sbjct: 236 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQ 295
Query: 62 ACLMILQKV 70
A MI QKV
Sbjct: 296 AETMIKQKV 304
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 51.6 bits (118), Expect = 2e-07
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
++++VPNS+ G IIGKGG IK E+S + ++IS L +R +T+ G E +
Sbjct: 123 IRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMR 182
Query: 62 ACLMILQKVVDDPQSGSCPNVSYADVAGPVANYNPTGSPYAVPT 105
A +IL K+ +D + Y+ + ++ YA+P+
Sbjct: 183 AIDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYALPS 226
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL-SLQERCITVVGEKESNKK 61
++ LV N+ AG +IGKGG+ I + + +SG+ +Q+S+ + +R I + G +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN 96
Query: 62 ACLMILQKV 70
+IL K+
Sbjct: 97 GLELILDKL 105
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELS-LQERCITVVGEKESNKK 61
V I V + G+++G+GG I +I + +G+ ++IS + +S +R +++ G + + ++
Sbjct: 257 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQ 316
Query: 62 ACLMILQKV 70
A MI QKV
Sbjct: 317 AETMIKQKV 325
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 46.8 bits (106), Expect = 7e-06
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQ-ISQKAKELSLQERCITVVGEK 56
++I VPN G+IIG+GG IK ++ +SG+ Q I Q A+ L+ER + + G+K
Sbjct: 274 IEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDK 328
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAK-ELSLQERCITVVGEKESNKKA 62
+I VP+S G++IGKGG I+ ++ SG+ +QI + ++ + S R + ++G + A
Sbjct: 179 RIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESA 238
Query: 63 CLMILQKVVDDPQSGSCP 80
++ V+ + ++G P
Sbjct: 239 -EKLISAVIAEAEAGGSP 255
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQI---SQKAKELSLQERCITVVGEKESNK 60
+++VP S G ++GKGG + ++++ +G+ +QI Q K +S ++ + + GE + +
Sbjct: 545 RLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVR 604
Query: 61 KACLMILQKVVDDPQSGSCPN 81
+A I ++ D S S N
Sbjct: 605 EAIFHITSRLRDSVFSNSMKN 625
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
++L P S G +IGK GN IKQ+++ +G+ +++ + +R IT++ + +S +
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPS--GSPDRVITIIAQADSKSRVK 107
Query: 64 L 64
L
Sbjct: 108 L 108
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL--SLQERCITVVGEKESNKK 61
++L +S AG +IGKGG + I++++G + I + + + + V G + KK
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKK 212
Query: 62 ACLMI 66
A + I
Sbjct: 213 ALVSI 217
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEK 56
KIL AG +IG GG ++ + ++G+++ + + +ER I V +
Sbjct: 455 KILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDD--CEERLIAVTASE 505
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQI---SQKAKELSLQERCITVVGEKESNK 60
+++VP S G ++GKGG + ++++ +G+ +QI Q K +S ++ + + GE + +
Sbjct: 545 RLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVR 604
Query: 61 KACLMILQKVVDDPQSGSCPN 81
+A I ++ D S S N
Sbjct: 605 EAIFHITSRLRDSVFSNSMKN 625
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
++L P S G +IGK GN IKQ+++ +G+ +++ + +R IT++ + +S +
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPS--GSPDRVITIIAQADSKSRVK 107
Query: 64 L 64
L
Sbjct: 108 L 108
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL--SLQERCITVVGEKESNKK 61
++L +S AG +IGKGG + I++++G + I + + + + V G + KK
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKK 212
Query: 62 ACLMI 66
A + I
Sbjct: 213 ALVSI 217
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEK 56
KIL AG +IG GG ++ + ++G+++ + + +ER I V +
Sbjct: 455 KILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDD--CEERLIAVTASE 505
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKA-KELSLQERCITVVGEKESNKKA 62
KI +PN G+IIGKGG IK ++ QSG+ +Q+++ + + R + + G + KA
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKA 196
Query: 63 CLMILQKVVDDPQSGS 78
++ V+ + ++G+
Sbjct: 197 -EQLITDVLQEAEAGN 211
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 7 VPNSTAGMIIGKGGNYIKQIKEQSGSYVQI 36
+PN+ G+IIGKGG IK ++ ++G+ +Q+
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQV 265
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSL----QERCITVVGEKESN 59
K+LVP+ G I+G+GG ++ I+ ++G+ ++I K + + L + I + GE
Sbjct: 150 KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI-VKDRNMPLCALNSDELIQISGEVLIV 208
Query: 60 KKACLMILQKVVDDP 74
KKA L I ++ ++P
Sbjct: 209 KKALLQIASRLHENP 223
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQK---AKELSLQERCITVVGEKESNK 60
++LVP+S G I+GKGG I +++ + + ++I K K S + + + GE + K
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAK 432
Query: 61 KACLMILQKV 70
+A + I ++
Sbjct: 433 EALIQITSRL 442
Score = 32.3 bits (70), Expect = 0.16
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
+ L P G +IG+GG+ +KQ++ + S ++I + ER IT+
Sbjct: 53 RYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP--GCDERVITI 99
Score = 30.7 bits (66), Expect = 0.47
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 2 FVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKE 42
F++++ P +IGKGG I Q+++++ + +++ E
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTE 325
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSL----QERCITVVGEKESN 59
K+LVP+ G I+G+GG ++ I+ ++G+ ++I K + + L + I + GE
Sbjct: 150 KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI-VKDRNMPLCALNSDELIQISGEVLIV 208
Query: 60 KKACLMILQKVVDDP 74
KKA L I ++ ++P
Sbjct: 209 KKALLQIASRLHENP 223
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQK---AKELSLQERCITVVGEKESNK 60
++LVP+S G I+GKGG I +++ + + ++I K K S + + + GE + K
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAK 432
Query: 61 KACLMILQKV 70
+A + I ++
Sbjct: 433 EALIQITSRL 442
Score = 32.3 bits (70), Expect = 0.16
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
+ L P G +IG+GG+ +KQ++ + S ++I + ER IT+
Sbjct: 53 RYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP--GCDERVITI 99
Score = 30.7 bits (66), Expect = 0.47
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 2 FVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKE 42
F++++ P +IGKGG I Q+++++ + +++ E
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTE 325
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQI--SQKAKELSLQ-ERCITVVGEKESNK 60
++LVP S AG +IGK G +K I+E S V++ S+ +LQ +R + VVGE S
Sbjct: 280 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVH 339
Query: 61 KACLMI 66
+A +I
Sbjct: 340 RALELI 345
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
++LVP G IIG+ G+ IK+I E++ + ++I ER + V G++E
Sbjct: 190 RMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPP--GTTERAVMVSGKEE 241
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAK-ELSLQERCITVVGEKESNKKA 62
+I VP+S G +IGKGG ++ ++ SG+ +QI + A+ + S R + ++G +KA
Sbjct: 235 RIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVSCIEKA 294
Query: 63 CLMILQKVVDDPQSGSCP 80
++ V+ + ++G P
Sbjct: 295 -EKLINAVIAEVEAGGVP 311
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
K+L P +IGKGG+ IK+I+E SGS ++++ + + C+ +V ES
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCG-DDECVIIVTATESPDDMK 373
Query: 64 LMILQKVV 71
M ++ V+
Sbjct: 374 SMAVEAVL 381
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
+++LV + G +IGK G+ I +I++++ + + IS K K+ L E V GE S + A
Sbjct: 397 MQLLVSSKVIGCVIGKSGSVINEIRKRTNANICIS-KGKKDDLVE----VSGEVSSVRDA 451
Query: 63 CLMILQKVVDD 73
+ I+ ++ +D
Sbjct: 452 LIQIVLRLRED 462
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQ-----ISQKAKELSLQ-ERCITVVGEKE 57
++LVP S + +IGK G IK+I+ ++ + V+ +S + +++ + + + GE E
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 58 SNKKACLMI 66
S K+A +
Sbjct: 202 SVKQALFAV 210
Score = 31.9 bits (69), Expect = 0.21
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQIS 37
++IL+P ++GKGG ++ I+ SG+ ++IS
Sbjct: 538 LEILIPAHAMSKVMGKGGGNLENIRRISGAMIEIS 572
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
+IL P G +IGK G I I+ + + +++ + S +R IT+
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCS--QRVITI 85
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
K+L P +IGKGG+ IK+I+E SGS ++++ + + C+ +V ES
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCG-DDECVIIVTATESPDDMK 373
Query: 64 LMILQKVV 71
M ++ V+
Sbjct: 374 SMAVEAVL 381
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
+++LV + G +IGK G+ I +I++++ + + IS K K+ L E V GE S + A
Sbjct: 397 MQLLVSSKVIGCVIGKSGSVINEIRKRTNANICIS-KGKKDDLVE----VSGEVSSVRDA 451
Query: 63 CLMILQKVVDD 73
+ I+ ++ +D
Sbjct: 452 LIQIVLRLRED 462
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQ-----ISQKAKELSLQ-ERCITVVGEKE 57
++LVP S + +IGK G IK+I+ ++ + V+ +S + +++ + + + GE E
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 58 SNKKACLMI 66
S K+A +
Sbjct: 202 SVKQALFAV 210
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
+IL P G +IGK G I I+ + + +++ + S +R IT+
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCS--QRVITI 85
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
+K++ +S G +IGKGG IK I++ SGS+++++ + + C+ V ES
Sbjct: 319 IKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVND--SRTNHDDDCVITVTATESPDDL 376
Query: 63 CLMILQKVV 71
M ++ V+
Sbjct: 377 KSMAVEAVL 385
Score = 35.1 bits (77), Expect = 0.022
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQ-----ISQKAKELSLQ-ERCITVVGEKE 57
++LVP+S ++IGK G+ IK I+ ++ + V+ +S + ++ + + + GE E
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETE 212
Query: 58 SNKKACLMI 66
S KKA +
Sbjct: 213 SVKKALFAV 221
Score = 34.7 bits (76), Expect = 0.029
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQ---KAKELSLQERCITVVGEKESN 59
+++LV + G IIGK G+ I +I++++ + + IS+ K + + + GE +
Sbjct: 401 MQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNV 460
Query: 60 KKACLMILQKVVDD 73
+ A + I+ ++ DD
Sbjct: 461 RDALIQIVLRLRDD 474
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKA 62
+++ +P + G ++G+GG + I+ SG+ ++IS S R + G E + A
Sbjct: 576 MEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKN--SHGGRVALISGTSEQKRTA 633
Score = 29.9 bits (64), Expect = 0.83
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
+IL P+ G +IGK G I I++++ + +++ S ER IT+
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCS--ERVITI 93
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
V + P G +IGKGG +I QI++++G+ ++++ + + CI + KE
Sbjct: 246 VCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETD---DDDCIIFISSKE 297
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQ---KAKELSL-QERCITVVGEKES 58
V++LVP+ G +IGKGG I+ ++ + + +++ + A L+L + + ++GE
Sbjct: 123 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLV 182
Query: 59 NKKACLMILQKVVDDP 74
++A + + D+P
Sbjct: 183 VREALYQVASLLHDNP 198
Score = 34.3 bits (75), Expect = 0.038
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
+ L P G IIGKGG KQI+ ++ S ++I++ +ER +T+ E
Sbjct: 22 RYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALP--GCEERVVTMYSTNE 73
Score = 33.9 bits (74), Expect = 0.051
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQK---AKELSLQERCITVVGEKESNK 60
++LV +S G +IGKGG I +++ + + ++I QK K E + + G ++
Sbjct: 332 RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAM 391
Query: 61 KACLMILQKV 70
KA ++ ++
Sbjct: 392 KALTQVILRL 401
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKEL----SLQERCITVVGEKESN 59
+++V G ++GKGG I+Q++ ++ ++++I + L SL E + +VGE +
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 60 KKACLMILQKV 70
K A ++ ++
Sbjct: 239 KNALAIVSSRL 249
Score = 33.1 bits (72), Expect = 0.089
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQ 38
+IL ++ AG +IGK G IK I++ +G+++ + +
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHE 105
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVV---GEKESNK 60
++L P + G IIGKGG+ I+ ++ +GS +++ S +ER + ++ G+K+
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPS-EERVVLIIAPSGKKKDES 80
Query: 61 KAC 63
C
Sbjct: 81 NVC 83
Score = 35.9 bits (79), Expect = 0.013
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQI---SQKAKELSLQERCITVVGEKESNK 60
++LV + G ++GKGG+ I +++ +G+ +++ Q K S + + V+G ++ +
Sbjct: 363 RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQ 422
Query: 61 KACLMILQKVVDDPQSGSCPNVSYADVAGPVANYNPTGSPYAVP 104
A IL ++ + G P + + GP P PY P
Sbjct: 423 DALFQILCRLREAMFPGRLP---FQGMGGPPP---PFMGPYPEP 460
Score = 34.7 bits (76), Expect = 0.029
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKAC 63
++L P G +IGKGG ++ ++ +SG+ +++S + +ER I + + ++
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHD--SEERIIVISARENLERRHS 336
Query: 64 L 64
L
Sbjct: 337 L 337
Score = 31.9 bits (69), Expect = 0.21
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQ---ERCITVVGEKESNK 60
+++V + ++ KGG I++I+E SG+ V+IS + + I + G+ S K
Sbjct: 151 RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVK 210
Query: 61 KACLMI---LQKVVDDPQSGSCP 80
KA L++ LQ+ P CP
Sbjct: 211 KALLLVTNCLQESGAPPTWDECP 233
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQ 46
KI V S AG IIGKGG + KQI ++G+ + I ++ +L+
Sbjct: 117 KISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLK 159
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 33.1 bits (72), Expect = 0.089
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 7 VPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMI 66
V S AG IIGKGG KQI Q+G + I ++ +L+ I + G E +A M+
Sbjct: 120 VDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKN--IVLEGTLEQISEASAMV 177
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKE---LSLQERCITVVGE 55
V++LV ++ A +IGK G+ IK I E SG+ V+I + + + ER + + GE
Sbjct: 168 VRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGE 223
Score = 30.7 bits (66), Expect = 0.47
Identities = 13/54 (24%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
+++VP + G IIG+ G++IK++ E++ + +++ ++ +R + + G++E
Sbjct: 77 RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLD--GPVNTPDRIVLISGKEE 128
>At2g22600.1 68415.m02679 KH domain-containing protein
Length = 632
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 5 ILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACL 64
IL + G ++G GG ++ ++ SG+ +++ + + I + G+ + KKA +
Sbjct: 144 ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQITGDVLAVKKALV 203
Query: 65 MILQKVVDD-PQSGSCPNVS 83
M+ + ++ P +G P +S
Sbjct: 204 MVSSYIQNNAPLNGYPPPLS 223
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 KILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITV 52
KI+ + AG IIGK G I+ ++ ++G+ + + K ER +TV
Sbjct: 280 KIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSG--ERVVTV 326
>At2g03110.1 68415.m00264 KH domain-containing protein
Length = 155
Score = 31.5 bits (68), Expect = 0.27
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 3 VKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQI 36
V++LVP+ G +IGKGG I+ ++ + + +++
Sbjct: 75 VRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV 108
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 31.1 bits (67), Expect = 0.36
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 5 ILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACL 64
+L+ S +IGK G +++I E++G VQ+ ++ +LS+ VV + E N+ + +
Sbjct: 141 LLMEGSHVVTVIGKNGELMQRILEETGCNVQL--RSHDLSICTNPGDVVLKIEGNRLSAV 198
Query: 65 MILQKVVDDPQSGSCPNVSYADV 87
M V + +CP +S A +
Sbjct: 199 M-KALVSISSRLQACPPISTASL 220
>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
protein similar to BPM [Hordeum vulgare] GI:20513851
Length = 968
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 26 IKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
IKE +G VQ+SQ+ ++ E+C+T G +E
Sbjct: 845 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEE 876
>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
protein
Length = 972
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 26 IKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
IKE +G VQ+SQ+ ++ E+C+T G +E
Sbjct: 849 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEE 880
>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
protein
Length = 964
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 26 IKEQSGSYVQISQKAKELSLQERCITVVGEKE 57
IKE +G VQ+SQ+ ++ E+C+T G +E
Sbjct: 841 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEE 872
>At3g44580.1 68416.m04791 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 163
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 24 KQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMIL 67
K++KE S S++ S A+ CI + EK + ++CL+ L
Sbjct: 113 KRVKENSHSFLTNSITARHCLRSATCIDLRKEKRLSSRSCLLRL 156
>At2g38580.1 68415.m04739 expressed protein ; expression supported
by MPSS
Length = 377
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 23 IKQIKEQSGSYVQISQKAKELSLQ 46
IKQ++E++GSY+Q +K +E +Q
Sbjct: 88 IKQLREENGSYLQKEEKLEERLVQ 111
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 4.4
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 9 NSTAGMIIGKGGNYIKQIKEQSGSYVQ-ISQKAKELSLQERCITVVGEK-ESNKKACLMI 66
N++ G G G+ + S + Q S K+ S T G K E+ K+
Sbjct: 190 NASIGSSSGSDGSSSSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSA 249
Query: 67 LQKVVDDPQSGSCPNVSYADVAGPVANYNPTGSPYAVPT 105
K V SG+ +Y D G + +P+GSP P+
Sbjct: 250 KTKEVSGGSSGN----TYKDTTGSSSGASPSGSPTPTPS 284
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 14 MIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCI-TVVGEKESNKKACLMI 66
++IG N + ++++SG V+I KE +++E + ++GEK +K M+
Sbjct: 307 LVIGLEKNLDESMEKESGMMVEIDALGKERTIKESEVERLIGEKNLIEKQMEML 360
>At2g19680.1 68415.m02300 mitochondrial ATP synthase g subunit
family protein contains Pfam profile: PF04718
mitochondrial ATP synthase g subunit
Length = 122
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 12 AGMIIGKGGN-YIKQIKEQSGSYVQ---ISQKAKELS---LQERCITVVGEKESNKK 61
A + K GN Y KQ+ EQ+ Y+Q +K ELS L R ++ G E+ +K
Sbjct: 15 ASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLASIPGRYETFRK 71
>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
family protein contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 386
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 7 VPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMI 66
VP ++ K G+ +K +KE Y +S+KA E Q + E + ++ L +
Sbjct: 139 VPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQ---FGSLAEYTAVEEKLLAL 195
Query: 67 LQKVVDDPQSGSCP 80
K +D Q+ P
Sbjct: 196 KPKNIDFAQAAGLP 209
>At4g29210.1 68417.m04179 gamma-glutamyltranspeptidase family
protein similar to SP|P07314
Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)
(Gamma- glutamyltransferase) (GGT) {Rattus norvegicus};
contains Pfam profilePF01019:
Gamma-glutamyltranspeptidase
Length = 637
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 14 MIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVDD 73
M + + G+ +K++ G+ VQ+ ++ + +E I +G K K L L V D
Sbjct: 570 MFLAERGHELKELS--GGAIVQLIVQSFKEEKEEEMIIEIGRKIGKKSKPLKGLLTAVSD 627
Query: 74 PQSGSCP 80
P+ P
Sbjct: 628 PRKDGKP 634
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 53 VGEKESNKKACLMILQKVVDDPQSGSCPNVSYADVA 88
V E + + C ++ K+++ GS P S+ D+A
Sbjct: 550 VKECHNEEAQCAYVIDKIIEITNDGSTPCCSHGDIA 585
>At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 26.6 bits (56), Expect = 7.7
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 22 YIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNK----KACLMILQKVVDDPQSG 77
Y+KQ + V + ++ KE+S+Q R +T K +K + L+ L K++D S
Sbjct: 144 YLKQNVLELNEEVGLMKRQKEMSVQVRMLTREIRKSLDKHMILRTTLVELSKILDLQNSA 203
Query: 78 S-CPNVSYADV-------AGPVANYN--PTGSPYAVPTAEVKEVT 112
PN + ++ A P+ ++ P P V E K VT
Sbjct: 204 VWMPNENRTEMHLTHELRANPMRSFRVIPINDPDVVQVRETKVVT 248
>At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 26.6 bits (56), Expect = 7.7
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 22 YIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNK----KACLMILQKVVDDPQSG 77
Y+KQ + V + ++ KE+S+Q R +T K +K + L+ L K++D S
Sbjct: 144 YLKQNVLELNEEVGLMKRQKEMSVQVRMLTREIRKSLDKHMILRTTLVELSKILDLQNSA 203
Query: 78 S-CPNVSYADV-------AGPVANYN--PTGSPYAVPTAEVKEVT 112
PN + ++ A P+ ++ P P V E K VT
Sbjct: 204 VWMPNENRTEMHLTHELRANPMRSFRVIPINDPDVVQVRETKVVT 248
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,668
Number of Sequences: 28952
Number of extensions: 114382
Number of successful extensions: 344
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 78
length of query: 157
length of database: 12,070,560
effective HSP length: 75
effective length of query: 82
effective length of database: 9,899,160
effective search space: 811731120
effective search space used: 811731120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -