Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000795-TA|BGIBMGA000795-PA|undefined
         (79 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   0.69 
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   1.6  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    23   3.7  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    23   4.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   6.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    22   8.5  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 23  LITGSVEGIMVVLDFIMEKIKEKPE 47
           L+TGSV+G++ +LD   E+    PE
Sbjct: 162 LLTGSVDGLVSLLDTTKEEDSTDPE 186


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 34  VLDFIMEKIKEKPE 47
           + DFI+EK KE PE
Sbjct: 162 IFDFILEKFKEVPE 175


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 25  TGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRD 65
           TG  EG  +    I E +KE  E      E VD +     D
Sbjct: 374 TGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQND 414


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 36 DFIMEKIKEKPELVKPFPEG 55
          +F  + I +KP LV  +PEG
Sbjct: 25 EFSYDNIDKKPILVASYPEG 44


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 6   IFVISIDKRVSTMERACLITGSVEGIMVVLDFIMEKIK-EKPELV 49
           I+ I I+  ++T++ +  +   V  + V  DF+ + IK E+P+ +
Sbjct: 509 IYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSI 553


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 29  EGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVIT 72
           E  + V   I   + E  + +  F +GV  +M Q+R KQ++ ++
Sbjct: 908 EAKLAVFQGIDSPVSESQKGMLYFVDGVTDEMLQNRRKQLLNVS 951


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,257
Number of Sequences: 5004
Number of extensions: 10059
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)