Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000795-TA|BGIBMGA000795-PA|undefined
         (79 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        40   2e-04
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    27   2.1  
SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)                        26   4.9  
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 25   6.5  
SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)                   25   6.5  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  

>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 17  TMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVI 71
           T ER  LI G VE I+ +LDF+++KI+++P+ +K     +     ++R KQ+ +I
Sbjct: 57  TQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIK---ASMSISFDRERAKQMKII 108


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 39  MEKIKEKPELVKPFPEGVDTKMPQDRDKQ 67
           M  I +KP  V P P+G + K+ QD+ +Q
Sbjct: 293 MYDIGDKPSTVVPLPQGAEVKL-QDKRRQ 320


>SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)
          Length = 608

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 4   ADIFVISIDKRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQD 63
           A+ F  S+  +V T+++AC I    E    VL         + E+V PF +         
Sbjct: 33  ANSFGTSVGSKVLTLKQACFIASIFEVAGAVLIGARVSAVSRIEIVLPFDDRPSLFNIVV 92

Query: 64  RDKQVIVITFDMIFE 78
            +   I+ T ++++E
Sbjct: 93  NEFMRILFTVNLVYE 107


>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 6    IFVISIDKRVSTMERACLITGSVEGIMV 33
            +F + ID  VS+     L TG V GI++
Sbjct: 993  VFALKIDLPVSSQATPLLTTGEVTGIVI 1020


>SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)
          Length = 605

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 34  VLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVITFDMI 76
           VLD +M K +E  +     P  +DT +  DR+  ++   F  +
Sbjct: 239 VLDMMMRKKREMADSESQLPPQIDTVLLLDRNVDLLTPLFTQL 281


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 35  LDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVI 69
           L+ ++EKIKE+  L K   +   +KM + R K++I
Sbjct: 632 LNILLEKIKEERGLRKQLNKASKSKMLKSRIKRLI 666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,253
Number of Sequences: 59808
Number of extensions: 67466
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 16,821,457
effective HSP length: 57
effective length of query: 22
effective length of database: 13,412,401
effective search space: 295072822
effective search space used: 295072822
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)