GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000795-TA|BGIBMGA000795-PA|undefined
         (79 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400...    29   0.62 
02_01_0260 - 1723476-1723502,1724051-1724148,1724276-1724339,172...    28   1.1  
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907...    26   3.3  
02_02_0556 - 11444512-11445577,11445730-11446007                       26   4.4  
11_06_0220 - 21374816-21376849                                         25   7.7  
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389...    25   7.7  

>02_02_0474 +
           10738476-10738797,10739568-10739677,10739891-10740094,
           10740400-10740576,10740659-10740811,10741535-10741624,
           10741939-10742049,10742169-10742285,10742881-10743032,
           10743116-10743200,10743597-10743691,10744211-10744376,
           10744459-10744654,10745662-10745795
          Length = 703

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 11  IDKRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIV 70
           +++ ++ +E   L+  SVEG M    F+++K  E    V      +D   P  R + V+ 
Sbjct: 199 VERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID--RPTARPEFVVN 256

Query: 71  ITFDMIFEI 79
            TF++  E+
Sbjct: 257 STFELFIEL 265


>02_01_0260 -
           1723476-1723502,1724051-1724148,1724276-1724339,
           1724458-1724563,1724641-1724677,1724763-1724856,
           1725452-1725568,1726450-1726714,1727329-1727396,
           1727478-1727642
          Length = 346

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 18  MERACLITGSVEGIMVVL---DFIMEKIKE---KPELVKPFPEGVDTKMPQD 63
           +E A LI G +E  MV +   D  + K+       E++KP P+GV T + +D
Sbjct: 53  LEMAGLIAGGLENGMVAMWNPDLKLRKLPSYLPDEEILKPHPDGVQTWIRKD 104


>02_05_1241 -
           35189111-35189389,35189604-35189711,35189982-35190713,
           35190811-35191230,35191484-35191565,35191719-35192002,
           35193104-35193256
          Length = 685

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/51 (25%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 2   SKADIFVISIDKRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPF 52
           +++++ + S+D+ +++ E        VEG+ + L+F+M  +K+ P ++ PF
Sbjct: 278 AQSEMVIDSLDRLITSWEEQKQSV-IVEGVHLSLNFVMGLMKKHPSII-PF 326


>02_02_0556 - 11444512-11445577,11445730-11446007
          Length = 447

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 38  IMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVITFDMIFE 78
           I+E +   P  +KP P+G+      + D++ +VI  D + E
Sbjct: 249 ILEPLPRPPHELKPLPQGIRYAFLHN-DREALVIISDKLSE 288


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 21  ACLITGSVEGIMVVLDFIMEKIKEKPEL 48
           AC  TG VE  M ++ ++ EK   KPE+
Sbjct: 539 ACKNTGLVEEGMELIKYMQEKCGLKPEI 566


>09_04_0237 -
           15936630-15937250,15937457-15937534,15938874-15938973,
           15940414-15942278
          Length = 887

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 33  VVLDFIMEKIKEKPELVKPFPEGVDTKMP 61
           V+ D ++ +++E PEL  P P    TK P
Sbjct: 344 VIRDAVIAELQEDPELHGPLPVQYLTKSP 372


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,780
Number of Sequences: 37544
Number of extensions: 60242
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)