GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000795-TA|BGIBMGA000795-PA|undefined
         (79 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical ...    35   0.008
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    28   0.90 
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    28   0.90 
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    26   2.8  
AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.     26   2.8  
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical pr...    25   6.4  
U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical pr...    25   6.4  
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ...    25   6.4  
AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical ...    25   6.4  
AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical ...    25   6.4  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    25   6.4  
AC006675-4|AAK84558.2|  125|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical
           protein Y59A8B.10 protein.
          Length = 413

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 17  TMERACLITGSVEGIMVVLDFIMEKIKEK 45
           T ER CL+ G +  IM V++ I +KI+EK
Sbjct: 87  TSERICLVKGRLNNIMAVIESIQDKIREK 115


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 38  IMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVITFDMIFEI 79
           ++EK+ EK +LV  +    + K P D   +V++ T+DM+  I
Sbjct: 299 LLEKLLEKDDLVIHYFYRNEDKKPDD-SHEVVITTYDMLKNI 339


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 38  IMEKIKEKPELVKPFPEGVDTKMPQDRDKQVIVITFDMIFEI 79
           ++EK+ EK +LV  +    + K P D   +V++ T+DM+  I
Sbjct: 298 LLEKLLEKDDLVIHYFYRNEDKKPDD-SHEVVITTYDMLKNI 338


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 13  KRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQD 63
           K+VS +++A L    VE  + +LD + + I E  E   P  E   +++P+D
Sbjct: 290 KKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEA--SEVPKD 338


>AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.
          Length = 964

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 13  KRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQD 63
           K+VS +++A L    VE  + +LD + + I E  E   P  E   +++P+D
Sbjct: 290 KKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEA--SEVPKD 338


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 34  VLDFIMEKIKEKPELVKPFPEGVDTKMPQD 63
           V D + + I++KP LV+    G+ T++P++
Sbjct: 856 VKDVVNKLIRKKPRLVEVVWNGITTQVPEE 885


>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
           protein W07A8.2b protein.
          Length = 1021

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 38  IMEKIKEKPELVKPFPEGVDTK 59
           + E+ +E PEL + FP+ V+ K
Sbjct: 245 LCERCRENPELFRVFPKNVNIK 266


>Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical
           protein W07A8.2a protein.
          Length = 1023

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 38  IMEKIKEKPELVKPFPEGVDTK 59
           + E+ +E PEL + FP+ V+ K
Sbjct: 247 LCERCRENPELFRVFPKNVNIK 268


>U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical
           protein T20F7.6 protein.
          Length = 423

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 26  GSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQV 68
           G ++GI+ V DFI   +K   E  K   E  +  M Q  ++++
Sbjct: 92  GKLDGILSVTDFIKVMLKIYRERTKCEKESTELDMTQIANEEI 134


>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
           protein W07A8.2b protein.
          Length = 1021

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 38  IMEKIKEKPELVKPFPEGVDTK 59
           + E+ +E PEL + FP+ V+ K
Sbjct: 245 LCERCRENPELFRVFPKNVNIK 266


>AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical
           protein W07A8.2a protein.
          Length = 1023

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 38  IMEKIKEKPELVKPFPEGVDTK 59
           + E+ +E PEL + FP+ V+ K
Sbjct: 247 LCERCRENPELFRVFPKNVNIK 268


>AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical
          protein B0205.1a protein.
          Length = 745

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 14 RVSTMERACLITGSVEGIMVVLDFIMEKIKE 44
          R ST+E+  L       + + +DF++EK K+
Sbjct: 15 RASTLEKISLKMSEDADLKIFMDFLVEKTKD 45


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 9   ISIDKRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQV 68
           +S D   + +E+  +I GS   +      I  K+ + P      P G+    PQ +  Q+
Sbjct: 361 LSRDPNTNPIEKTFVIRGSEAQVEHAKHLIRVKVGDIPPNTPYTPAGMPQPQPQQQPPQM 420

Query: 69  IVI 71
           + +
Sbjct: 421 VQV 423


>AC006675-4|AAK84558.2|  125|Caenorhabditis elegans Hypothetical
          protein M02H5.8 protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 11 IDKRVSTMERACLITGSVEGIMVVLDFIMEKIKEKPELVK 50
          ++K  + +  A L +G+++GI+ +      K  EKP+L +
Sbjct: 41 VEKIKTELSAAGLSSGAIDGILKIAATYKPKEGEKPDLAQ 80


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,364
Number of Sequences: 27539
Number of extensions: 56907
Number of successful extensions: 204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 14
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)