Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    29   0.15 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   2.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   3.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    23   5.5  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    23   7.2  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    23   7.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    23   7.2  

>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 35  SHFSSVQDLVTALPLANGHGSITSHFGESIVNAFES-IGFVVER 77
           S + ++ +L TA  ++N HG  T H  E I+N F + +G  V R
Sbjct: 171 SFYFTLSNLQTAKEISN-HGRSTGHIPELIINNFSTRLGMTVAR 213


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 11   PSPEITDSRKRPLDGDSE 28
            PSP I++SRK+P   D++
Sbjct: 1249 PSPAISESRKKPSSKDTK 1266


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
          Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 37 FSSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVV 75
          F S +D     PL+  H  I    G    N F +I FV+
Sbjct: 11 FKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVL 49


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 19  RKRPLDGDSENGDVKRSHFSS 39
           RKR +D D E  +VKR+  +S
Sbjct: 91  RKRSIDNDYELSNVKRNDITS 111


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 60  FGESIVNAFESIGFVVERRACTTRALAP 87
           F ESI+N  E++     R+ C +  + P
Sbjct: 205 FAESILNIHEAVTTTKTRKLCFSATMPP 232


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 19  RKRPLDGD-SENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGESIVNAFESIG 72
           +K  L  D S +  + R   S ++      PL+N       H  ES+ + ++S+G
Sbjct: 63  KKLQLSNDASTSKSIDRPPISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVG 117


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 2   AADTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFS 38
           A  +   + P+ E T +RK  ++  S + ++K SHFS
Sbjct: 441 APKSQFSSSPTKEST-TRKSEVEPPSPSKEIKSSHFS 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,525
Number of Sequences: 5004
Number of extensions: 14438
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 92
length of database: 2,362,478
effective HSP length: 62
effective length of query: 30
effective length of database: 2,052,230
effective search space: 61566900
effective search space used: 61566900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)