Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04840-1|AAA16022.1|  510|Homo sapiens onconeural ventral antige...    31   0.42 
BC075039-1|AAH75039.1|  507|Homo sapiens neuro-oncological ventr...    31   0.42 
BC075038-1|AAH75038.1|  507|Homo sapiens neuro-oncological ventr...    31   0.42 
U70477-1|AAB88661.1|  498|Homo sapiens astrocytic NOVA-like RNA-...    30   0.98 
AF083898-1|AAC72355.1|  492|Homo sapiens RNA-binding protein Nov...    30   0.98 

>U04840-1|AAA16022.1|  510|Homo sapiens onconeural ventral
          antigen-1 protein.
          Length = 510

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 17 DSRKRPLDGDSENGDVKRSHF-SSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVV 75
          DSRKRPL+   E G  KR++     Q  +  L  +   GSI    G++IV   +  G  +
Sbjct: 24 DSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83

Query: 76 E 76
          +
Sbjct: 84 K 84


>BC075039-1|AAH75039.1|  507|Homo sapiens neuro-oncological
          ventral antigen 1 protein.
          Length = 507

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 17 DSRKRPLDGDSENGDVKRSHF-SSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVV 75
          DSRKRPL+   E G  KR++     Q  +  L  +   GSI    G++IV   +  G  +
Sbjct: 24 DSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83

Query: 76 E 76
          +
Sbjct: 84 K 84


>BC075038-1|AAH75038.1|  507|Homo sapiens neuro-oncological
          ventral antigen 1 protein.
          Length = 507

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 17 DSRKRPLDGDSENGDVKRSHF-SSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVV 75
          DSRKRPL+   E G  KR++     Q  +  L  +   GSI    G++IV   +  G  +
Sbjct: 24 DSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83

Query: 76 E 76
          +
Sbjct: 84 K 84


>U70477-1|AAB88661.1|  498|Homo sapiens astrocytic NOVA-like
          RNA-binding protein protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 13 PEITDSRKRPLDGDSENGDVKRSHFSSVQD-LVTALPLANGHGSITSHFGESIVNAFESI 71
          PE  DSRKRPL+   E    KRS+     +  +  L  +   GSI    G++IV   +  
Sbjct: 9  PEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKET 68

Query: 72 GFVVE 76
          G  ++
Sbjct: 69 GATIK 73


>AF083898-1|AAC72355.1|  492|Homo sapiens RNA-binding protein
          Nova-2 protein.
          Length = 492

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 13 PEITDSRKRPLDGDSENGDVKRSHFSSVQD-LVTALPLANGHGSITSHFGESIVNAFESI 71
          PE  DSRKRPL+   E    KRS+     +  +  L  +   GSI    G++IV   +  
Sbjct: 3  PEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKET 62

Query: 72 GFVVE 76
          G  ++
Sbjct: 63 GATIK 67


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,441
Number of Sequences: 224733
Number of extensions: 462838
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 73,234,838
effective HSP length: 70
effective length of query: 22
effective length of database: 57,503,528
effective search space: 1265077616
effective search space used: 1265077616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)