Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.4  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    20   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   4.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 9   TCPSPEITDSRKRPLDGDSENGDVKRSHFS---SVQDLVTALPLANGHG 54
           T P P++ +   + L G  E  +V+++      S++DLV    L    G
Sbjct: 687 TTPPPQVDEVDDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEGSGG 735


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 58

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 11 PSPEITDSRKRPLDGDSE 28
          PS +I      PLD D E
Sbjct: 18 PSGDILSPSSEPLDNDKE 35


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 11 PSPEITDSRKRPLDGDSE 28
          PS +I      PLD D E
Sbjct: 18 PSGDILSPSSEPLDNDKE 35


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,603
Number of Sequences: 429
Number of extensions: 838
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 140,377
effective HSP length: 48
effective length of query: 44
effective length of database: 119,785
effective search space:  5270540
effective search space used:  5270540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)