Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   0.72 
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m...    27   1.3  
At2g43190.3 68415.m05368 ribonuclease P family protein similar t...    26   3.8  
At2g43190.2 68415.m05367 ribonuclease P family protein similar t...    26   3.8  
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ...    25   5.1  
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ...    25   5.1  
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ...    25   5.1  
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)...    25   6.7  
At2g40190.1 68415.m04942 glycosyl transferase family 1 protein c...    25   6.7  
At2g10950.1 68415.m01169 BSD domain-containing protein contains ...    25   6.7  

>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 2    AADTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDL 43
            A D G++T   PE +++  +P +G+ EN  V++  F    +L
Sbjct: 4619 AKDDGVETADEPEESNTSDKPEEGNDEN--VEQDDFDDTDNL 4658


>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
           melanogaster, EMBL:AE003739
          Length = 549

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 49  LANGHGSITSHFGESIVNAFESIGFVVERRACTTRALAPP 88
           L  GH S+ +H   S + A E + F+ E+R+ TT+  APP
Sbjct: 311 LYEGH-SVNTHLLRSTMIA-EFLPFMNEKRSATTQVKAPP 348


>At2g43190.3 68415.m05368 ribonuclease P family protein similar to
           Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4)
           (Swiss-Prot:O95707) [Homo sapiens]
          Length = 295

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 8   DTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGESIVNA 67
           D+ P+P  T  +K P D DS     K SH      L T +  ++  G+I      +++ +
Sbjct: 58  DSLPTPSKTSIKKDPKDDDSV-AYTKLSHPVDENLLATNVKFSSAKGTIVDKVLHNLLRS 116

Query: 68  FES 70
            +S
Sbjct: 117 GDS 119


>At2g43190.2 68415.m05367 ribonuclease P family protein similar to
           Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4)
           (Swiss-Prot:O95707) [Homo sapiens]
          Length = 295

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 8   DTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGESIVNA 67
           D+ P+P  T  +K P D DS     K SH      L T +  ++  G+I      +++ +
Sbjct: 58  DSLPTPSKTSIKKDPKDDDSV-AYTKLSHPVDENLLATNVKFSSAKGTIVDKVLHNLLRS 116

Query: 68  FES 70
            +S
Sbjct: 117 GDS 119


>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 19  RKRPLDGDSENGDVKRSHFSSVQDL 43
           RKR +D D E+GD K S  S +Q+L
Sbjct: 81  RKRTIDADEEDGDSK-SESSILQNL 104


>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 19  RKRPLDGDSENGDVKRSHFSSVQDL 43
           RKR +D D E+GD K S  S +Q+L
Sbjct: 81  RKRTIDADEEDGDSK-SESSILQNL 104


>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
          finger) family protein similar to SP|O15541 Zinc finger
          protein 183 {Homo sapiens}; contains Pfam profiles
          PF04396: Protein of unknown function, DUF537, PF00097:
          Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
          finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 586

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 19 RKRPLDGDSENGDVKRSHFSSVQDL 43
          RKR +D D E+GD K S  S +Q+L
Sbjct: 43 RKRTIDADEEDGDSK-SESSILQNL 66


>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
           identical to SP|O24617 DNA mismatch repair protein MSH2
           (AtMsh2) {Arabidopsis thaliana}
          Length = 937

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 15  ITDSRKRPLDGDSENGDVKR---SHFSSVQDLVTALPLANGHGSITSHFGESIVNAFESI 71
           IT+ +K    G   + D+KR    +   V+DLV+   LA         F E + N     
Sbjct: 222 ITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYG 281

Query: 72  GFVVER 77
            F + R
Sbjct: 282 NFTIRR 287


>At2g40190.1 68415.m04942 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 463

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 29  NGDVKRSHFSSVQDLVTAL--PLANGHGSITSHFGESIV 65
           +GDV+    +  ++LV  L   +A  HG I  HFG S+V
Sbjct: 334 DGDVQFYKNAMYRELVELLGNAVAGLHGMIDEHFGISVV 372


>At2g10950.1 68415.m01169 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 336

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 23  LDGDSENGDVKRSHFSSVQDLVTAL 47
           LD + E  + +R+H S+++DLV  L
Sbjct: 136 LDTEFELSEAQRAHASAIEDLVPGL 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,696
Number of Sequences: 28952
Number of extensions: 83394
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 10
length of query: 92
length of database: 12,070,560
effective HSP length: 69
effective length of query: 23
effective length of database: 10,072,872
effective search space: 231676056
effective search space used: 231676056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)