GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.69 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   1.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           19   6.5  
AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash pro...    19   6.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    19   8.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    19   8.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    19   8.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 0.69
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 48  PLANGHGSITSHFGESIVNAFESIGFVVE 76
           P+A+ H ++ S  G+S ++ F S+ + V+
Sbjct: 373 PVADHHANLYSRPGDSGLDLFLSVDYAVK 401


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 4   DTGMDTCPSPEITDSRKRPLDGDSENGDVKRSH 36
           DT  DT    +  +S +  ++ +S+NGD    H
Sbjct: 86  DTNGDTSQVDDQNESLEASVNENSKNGDDDEGH 118


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 51 NGHGSITSHFGESIVNAFES 70
          NG  ++  H    I  AFES
Sbjct: 70 NGFANLRQHIPNFIAAAFES 89


>AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash
          protein protein.
          Length = 40

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 51 NGHGSITSHFGESIVNAFES 70
          NG  ++  H    I  AFES
Sbjct: 10 NGFANLRQHIPNFIAAAFES 29


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 19.0 bits (37), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 68  FESIGFVVERRACTTRALAPPHSRC 92
           ++ + +++  R+    ALA   SRC
Sbjct: 78  YQPVSYILNTRSGDEAALADMISRC 102


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 19.0 bits (37), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 68  FESIGFVVERRACTTRALAPPHSRC 92
           ++ + +++  R+    ALA   SRC
Sbjct: 79  YQPVSYILNTRSGDETALADMISRC 103


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 19.0 bits (37), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 68  FESIGFVVERRACTTRALAPPHSRC 92
           ++ + +++  R+    ALA   SRC
Sbjct: 79  YQPVSYILNTRSGDEAALADMISRC 103


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,679
Number of Sequences: 317
Number of extensions: 655
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 92
length of database: 114,650
effective HSP length: 47
effective length of query: 45
effective length of database: 99,751
effective search space:  4488795
effective search space used:  4488795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)