Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
(92 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904 30 0.27
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 27 1.5
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 27 1.9
05_04_0064 - 17613070-17614749 27 2.5
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 27 2.5
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 26 3.4
05_02_0163 - 7220885-7220997,7221026-7221082,7221208-7221309,722... 26 4.4
01_05_0523 - 22915390-22915901,22916496-22916619,22916708-229168... 26 4.4
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 25 7.8
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 25 7.8
06_01_1130 - 9337071-9337483,9337896-9338061,9338111-9338308,933... 25 7.8
04_03_0707 - 18886191-18886402,18886828-18887134,18887139-18887405 25 7.8
>06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904
Length = 345
Score = 29.9 bits (64), Expect = 0.27
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 4 DTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGES 63
++G+ + +S P D NGDV S + A IT HFGES
Sbjct: 251 ESGLFDVEHTGVFESSWDPHDDSKSNGDVVADCARSADSIANCSIRAVIKPLITDHFGES 310
Query: 64 IVN-AFESIGFVVERRACTTRALAP 87
IV+ F+ +V + RA+ P
Sbjct: 311 IVDELFQVYVPIVAKHLEKGRAMYP 335
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 4 DTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGES 63
++G+ + +S P D NGD S + A IT HFGES
Sbjct: 271 ESGLFDVEHTGVFESSWDPHDDSKSNGDAVADCARSADSIANCSIRAVIKPLITDHFGES 330
Query: 64 IVN 66
IV+
Sbjct: 331 IVD 333
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 17 DSRKRPLDGDSENGDVKRSHFSSVQDLVTALPLA--NGHGSITSH 59
D+ DG S+ G+ + H S+Q VT+ P++ +G G TS+
Sbjct: 235 DASSTDKDGKSDEGNQSKEHVQSIQ--VTSGPMSGESGQGKATSN 277
>05_04_0064 - 17613070-17614749
Length = 559
Score = 26.6 bits (56), Expect = 2.5
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 1 MAADTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQD--LVTALPLANGHGSITS 58
+AA TCP+P DS ++ + DV +++ L LP + S+ +
Sbjct: 248 LAAAGKAGTCPTPT-ADSFFGLMEVHTCISDVSEILMPALKQEALDLRLPDSEQMQSLVN 306
Query: 59 HFGESIVNAFESIGFVVERRACTTRALAP 87
GE++ N +S+G + + A A+ P
Sbjct: 307 KIGEAMANTQDSLGEAIRKTAKDAEAVTP 335
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 26 DSENGDVKRSHFSSVQDLVTALPLANG 52
D + ++R HF +Q ++ LP+ NG
Sbjct: 315 DEADRMIERGHFHELQSIIEMLPVTNG 341
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 19 RKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVVERR 78
RKR +G + KR H +D +PL + SIT S N E +G +
Sbjct: 474 RKRKAEGFVDGDSGKRRHLEIAEDPEDEIPLIDRQNSITMMVNGS-SNHVEIVGIGKDSM 532
Query: 79 ACTTR 83
A R
Sbjct: 533 ASWAR 537
>05_02_0163 -
7220885-7220997,7221026-7221082,7221208-7221309,
7221337-7221802,7222042-7222355,7222725-7222914
Length = 413
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 45 TALPLANGHGSITSHFGESI 64
T + L NGH SIT+H +
Sbjct: 247 TEIELCNGHSSITNHISSGV 266
>01_05_0523 -
22915390-22915901,22916496-22916619,22916708-22916844,
22917383-22917518,22917614-22917951,22919426-22919663
Length = 494
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 25 GDSENG-DVKRSHFSSVQDLVTALPLANGHGSIT--SHFGESIVNAFESIGFVVERRACT 81
G+S++ D R H SVQ + + ++ GSI+ S GE + AF+ F C
Sbjct: 79 GESKSANDGCRDH--SVQPMASGSTTSSNTGSISPSSIVGEELKLAFQLRRFTFNELKCA 136
Query: 82 TRALAP 87
TR P
Sbjct: 137 TRNFRP 142
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 8 DTCPSPEITDSRKRPLDGDSENGD 31
D CPSP + R++ +D + ++ D
Sbjct: 52 DPCPSPSPSPKRRKKVDDEEDDKD 75
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 7 MDTCPSPEITDSRKRPLDGDS 27
+DTC P T +R+ PL G S
Sbjct: 146 LDTCDGPAPTPTRRIPLSGAS 166
>06_01_1130 -
9337071-9337483,9337896-9338061,9338111-9338308,
9338420-9338611,9338669-9338737,9338738-9338971
Length = 423
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 22 PLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITS 58
PLDG +N SH ++ D L NG G + S
Sbjct: 329 PLDGGDDNISAMDSHTAAAFDNAYFGTLVNGEGLLNS 365
>04_03_0707 -
18886191-18886402,18886828-18887134,18887139-18887405
Length = 261
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 39 SVQDLVTALPLANGHGSITSHFGESIVNAFESIGFVVERRACTTRALAPP 88
+ ++LVT LPL I+ H G + + F +IG+ RRA T ++ PP
Sbjct: 50 ATKELVT-LPLG-----ISCHNGCVVWDRFAAIGYDPWRRATGTSSVLPP 93
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,597
Number of Sequences: 37544
Number of extensions: 107184
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 12
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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