GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   28   1.2  
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   27   1.6  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)                    26   3.7  
SB_19679| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)                     26   4.8  
SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016)                   25   6.4  
SB_4400| Best HMM Match : Borrelia_P13 (HMM E-Value=1.6)               25   6.4  
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_39218| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 12  SPEITDSRKRP-LDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFGES-IVNAFE 69
           SP ++ +RKR  +   SEN D   + F+    +V        +    +HF +  IVNA +
Sbjct: 348 SPSLSPARKRQCIMMSSENSDDTDTPFAKTMIVVQD---NKENSEPKNHFKDKRIVNASQ 404

Query: 70  SIGFVVER 77
            IGFV ER
Sbjct: 405 HIGFVDER 412


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 3    ADTGMDTCPSPEITDSRKRPLDGDSENGDVKRSHFSSVQDLV 44
            +D  +  C S   +DS     DGD E G  +R++ S++ D V
Sbjct: 1082 SDEDLVLCDSSSDSDSDSSDCDGDEEGGSAERTN-SAIGDAV 1122


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 23   LDGDSENGDVKRSHFSSVQDLVTAL 47
            +DG    GDV++S F  ++D V+ L
Sbjct: 2397 VDGSGNIGDVEKSKFDQLKDFVSTL 2421


>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
          Length = 170

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 51  NGHGSITSHFGESIVNAFES-IGFVVER 77
           +GHG +TSH  E I+N F + +G  V R
Sbjct: 110 HGHGKMTSHKPELILNNFNTRLGHSVAR 137


>SB_19679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 39  SVQDLVTALPLANGHGSITSHFGESIVNAF-ESIGFV 74
           +++D VT  PL  G   +TS F E+I +   ES  FV
Sbjct: 145 NIEDSVTEKPLRKGRSLVTSSFVENIQDTTNESTYFV 181


>SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)
          Length = 461

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 39 SVQDLVTALPLANGHGSITSHFGESIVNAF-ESIGFV 74
          +++D VT  PL  G   +TS F E+I +   ES  FV
Sbjct: 2  NIEDSVTEKPLRKGRSLVTSGFVENIQDTTNESTYFV 38


>SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016)
          Length = 556

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 44  VTALPLANGHGSITSHFGESIVNAFESIGFVVE 76
           +T L L  G GSI +     ++N F  IG VVE
Sbjct: 205 LTLLFLVPGFGSIGTMIEGPVINRFGRIGTVVE 237


>SB_4400| Best HMM Match : Borrelia_P13 (HMM E-Value=1.6)
          Length = 250

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 35 SHFSSVQDLVTALPLANGHGSITSHFGESIVNAFESIGFV 74
          SH +S+   VTA+P  +G+G +    GE++V ++    F+
Sbjct: 45 SH-TSISINVTAIPNTSGNGILAVLGGETLVPSYSPAWFI 83


>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 5   TGMDTCPSPEITDSRKRPLDGDSENGD 31
           T + T  S E+  + K P D D +NGD
Sbjct: 245 TSLTTTISEEMKSTVKTPEDDDDDNGD 271


>SB_39218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 26 DSENGDVKRSHFSSVQDLVT 45
          D ENGD +RS F+S Q   T
Sbjct: 24 DEENGDCRRSGFASDQSTET 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,440
Number of Sequences: 59808
Number of extensions: 117141
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 13
length of query: 92
length of database: 16,821,457
effective HSP length: 69
effective length of query: 23
effective length of database: 12,694,705
effective search space: 291978215
effective search space used: 291978215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)