GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000794-TA|BGIBMGA000794-PA|undefined
         (92 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical pr...    30   0.19 
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    26   3.1  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    26   4.1  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    26   4.1  
AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    25   9.4  

>Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical
          protein F28C6.1 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 8  DTC-PSPEITDSRKRPLDGDSENGDVKRS----HFSSVQDLVTALPLANG 52
          D C PSP  + SRKRP   DSENG+  +         VQ+     P+ NG
Sbjct: 23 DICEPSPSSSSSRKRP--ADSENGNSAKMPVVIPMQPVQNFTMQYPIDNG 70


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 43  LVTALPLANGHGSITSHFGESIVNAFESIGF 73
           L+   PL  G G++    GE+IVN F S  +
Sbjct: 799 LIAPCPLGMGEGTLYWDDGETIVNDFNSYDY 829


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 60  FGESIVNAFESIGFVVERRACTTRALAPPHSRC 92
           FG  +V+A  ++ FV+ER   T R+ +  HS C
Sbjct: 111 FGIRLVSA-TTVPFVIERYIATVRSKSYEHSGC 142


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 60  FGESIVNAFESIGFVVERRACTTRALAPPHSRC 92
           FG  +V+A  ++ F++ER   T R+ +  HS C
Sbjct: 111 FGIRLVSA-TTVPFIIERYIATVRSTSYEHSGC 142


>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 53  HGSITSHFGESIVNAFESIGFVVERRACTTR 83
           HG +T + GE I +  + IGF+   R+   R
Sbjct: 363 HGPLTMYKGERITSVDKDIGFIRHYRSVEQR 393


>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 33  KRSHFSSVQDLVTALPLANGHGSITS-----HFGESIVNAFES 70
           K S F S ++ +TA  L N H +IT      H+G   V    S
Sbjct: 234 KDSFFLSAEECITAAMLQNQHPNITEYSMDRHYGSKFVTVVAS 276


>AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.4b protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 33  KRSHFSSVQDLVTALPLANGHGSITS-----HFGESIVNAFES 70
           K S F S ++ +TA  L N H +IT      H+G   V    S
Sbjct: 234 KDSFFLSAEECITAAMLQNQHPNITEYSMDRHYGSKFVTVVAS 276


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 33  KRSHFSSVQDLVTALPLANGHGSITS-----HFGESIVNAFES 70
           K S F S ++ +TA  L N H +IT      H+G   V    S
Sbjct: 234 KDSFFLSAEECITAAMLQNQHPNITEYSMDRHYGSKFVTVVAS 276


>AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.5b protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 33  KRSHFSSVQDLVTALPLANGHGSITS-----HFGESIVNAFES 70
           K S F S ++ +TA  L N H +IT      H+G   V    S
Sbjct: 234 KDSFFLSAEECITAAMLQNQHPNITEYSMDRHYGSKFVTVVAS 276


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 9    TCPSPEITDSRKRPLDGD 26
            TCP PE+ DS + PL GD
Sbjct: 1157 TCPLPELKDSMQLPL-GD 1173


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 9    TCPSPEITDSRKRPLDGD 26
            TCP PE+ DS + PL GD
Sbjct: 1128 TCPLPELKDSMQLPL-GD 1144


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 9    TCPSPEITDSRKRPLDGD 26
            TCP PE+ DS + PL GD
Sbjct: 1128 TCPLPELKDSMQLPL-GD 1144


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 60  FGESIVNAFESIGFVVERRACTTRALAPPHSRC 92
           FG  +++A  +I F++ER   T ++ +  HS C
Sbjct: 111 FGMRLISA-TTIPFIIERYVATVKSPSYEHSGC 142


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,095
Number of Sequences: 27539
Number of extensions: 84660
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 13
length of query: 92
length of database: 12,573,161
effective HSP length: 69
effective length of query: 23
effective length of database: 10,672,970
effective search space: 245478310
effective search space used: 245478310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)