Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000793-TA|BGIBMGA000793-PA|IPR005578|Hrf1
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...   123   5e-29
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    28   1.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.8  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   2.4  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   5.6  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score =  123 bits (296), Expect = 5e-29
 Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 26/271 (9%)

Query: 93  AQISSMLQQPVVQDMAIQYGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLM 152
           A  S+ L       M  Q G      G+E V++   K++  +RL +YF V   YV+ KL+
Sbjct: 42  ANPSAYLPNSATAQMGFQLGKNAVNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLL 101

Query: 153 LIVFPYTHKEWMVKYDQ-------DTPVQPRYDINAPDLYIPSMGYVTYVLLAGFMLGLQ 205
           LI+FP+  + W  K  +       +    P  D+N+PD+YIP M + T++LL   + GLQ
Sbjct: 102 LIIFPWRRRSWARKLRRSEINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQ 161

Query: 206 HRFSPEQIGIQASSALAYIIFEMXXXXXXXXXXXXXXXXKTLDLLAYSGYKYTVMISSLL 265
             F PE  G++AS A A ++ E                 + LDLLA+SGYK+  +I + L
Sbjct: 162 DDFQPELFGLRASKACAVVLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSL 221

Query: 266 AGLLAGRTGYYCGLLYSSCALSYFLVKTLRLQLLSGSQGPEQPSYGFPNPPYAANPYSDA 325
           + L           LY   A ++FL+++L+  +L             P    A N    +
Sbjct: 222 SKLFEMPWVTRFVFLYMYLATAFFLLRSLKYAVL-------------PESTMAINATITS 268

Query: 326 WDKPTPGGTKRRVYFLLFVAITQPLLCWWLT 356
             +       RR+YFL F+A +Q L  + L+
Sbjct: 269 HQR------SRRIYFLFFIAASQILFMYVLS 293


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 309 SYGFPNPPYAANPYSDAWDKPTPGGTKRRVYFLL 342
           S+G    P+    +SD  D+P PG    R+YFL+
Sbjct: 114 SWGLSERPFLGIIFSD--DEPYPGDVASRIYFLV 145


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 165 VKYDQDTPVQPRYDINAPDLYIPSMGYVTYVLLAG 199
           V Y++  PV+P    +  D + PS  + T+V + G
Sbjct: 277 VNYEKKYPVKPNSQCSGIDFFTPSTAFPTHVQILG 311


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 305 PEQPSYGFPNPPYA--ANPYSDAWDKPTPGGTKRRVYFLLFVAITQPLL 351
           P  PS+  P+PPY   A P  D      PG  K R Y L       PLL
Sbjct: 150 PHPPSFVQPHPPYGIFAAPILDVRVLTNPGAVK-RTYNLCLDISKYPLL 197


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 283 SCALSYFLVKTLRLQLLSGSQGPEQPSYGFPNPPYAANPYS 323
           S A+ +  +    L L SG   PE PSY   +P YA N  S
Sbjct: 100 SSAVDFSAINVKNLNLKSGLFDPEPPSY---DPDYAFNQRS 137


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,864
Number of Sequences: 5004
Number of extensions: 62932
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 6
length of query: 372
length of database: 2,362,478
effective HSP length: 74
effective length of query: 298
effective length of database: 1,992,182
effective search space: 593670236
effective search space used: 593670236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)