GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000793-TA|BGIBMGA000793-PA|IPR005578|Hrf1
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0336 - 4414227-4414608,4414690-4414841,4414931-4415029,441...   101   9e-22
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    97   2e-20
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     32   0.85 
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880...    30   3.4  
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    30   3.4  
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    29   8.0  

>04_01_0336 -
           4414227-4414608,4414690-4414841,4414931-4415029,
           4415131-4415340
          Length = 280

 Score =  101 bits (242), Expect = 9e-22
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 111 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 170
           YG +      E +Q  ++++   S  +YYF V+ +YV  KL +I+FP+ H+    +  + 
Sbjct: 55  YGEKFLGSSSEFMQSNINRYF--SNPQYYFHVNDQYVRNKLKVILFPFLHRGHWTRISEP 112

Query: 171 TPVQ-----PRYDINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQASSALAYII 225
              +     P YDINAPDLYIP M + ++++LAGF LG   +F+PE I +Q S  L    
Sbjct: 113 VGGRLSYKPPIYDINAPDLYIPFMAFGSFIILAGFTLGFMGKFTPEAINLQFSRGLIGWA 172

Query: 226 FEMXXXXXXXXXXXXXXXXKTLDLLAYSGYKYTVMISSLLAGLLAGRTGYYCGLLYSSCA 285
            ++                  LDL+AY GY +  +  ++++ LL   + Y+  + + S  
Sbjct: 173 LQI-VILKGLLYSMGGGEVPLLDLVAYGGYLFAGLSLAVISRLLWAYS-YFVMMPWMSLC 230

Query: 286 LSYFLVKTLRLQLLSGSQGPEQPS 309
           +  FLV+T++  L +  +  E+ S
Sbjct: 231 MGVFLVRTMKRVLFTEMRSSERHS 254


>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 111 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 170
           YG +      E +Q  + +++  S  +YYF V+++YV  KL +I+FP+ H+    +  + 
Sbjct: 147 YGEKFLGSSSEFMQSNITQYL--SNPQYYFQVNSQYVRNKLKVILFPFLHRGHWTRITEP 204

Query: 171 TPVQPRY-----DINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQASSALAYII 225
              +  Y     DINAPDLYIP M + TYV++AG+ LG+  RF+PE + +Q +  L    
Sbjct: 205 VGGRLSYKPPIQDINAPDLYIPLMAFGTYVVIAGYALGVLGRFTPEALTLQFTKGLLGWF 264

Query: 226 FEMXXXXXXXXXXXXXXXXKTLDLLAYSGYKYTVMISSLLAGLLAGRTGYYCGLLYSSCA 285
            ++                  LD++AY+GY +     ++L  +      YY  L + S  
Sbjct: 265 LQV-ILIRVLLYTLGSGEAPLLDIVAYAGYGFAGTSLAMLVRVF-WSPSYYFVLPWFSIC 322

Query: 286 LSYFLVKTLRLQLLSGSQGPEQ 307
              FLVKT++  LL   +  E+
Sbjct: 323 TGVFLVKTMKRVLLGAPRSYER 344


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 312 FPNPPYAANPYSDAWDKPTPGGTKRRVY 339
           FPNP + A+  S A+D P+P   ++R Y
Sbjct: 241 FPNPAFLASTSSAAYDSPSPSKKQKRFY 268


>09_04_0324 -
           16686872-16687074,16687479-16687521,16687735-16688068,
           16688190-16688854
          Length = 414

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 305 PEQPSYGFPNPPYAANPYSDAWDKPTP 331
           P  PS   P+PP A  P S  WD P P
Sbjct: 3   PPPPSPPPPSPPPAPAPPSSRWDTPVP 29


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 295 RLQLLSGSQGPEQPSYGFPNPPYAA-NPYSDAWDKPTPGGTK 335
           RL  L      +Q S+ F   PY      + +WD P PGG K
Sbjct: 267 RLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFK 308


>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 302 SQGPEQPSYGFPNPPYAANPYSDAWDKPT 330
           SQ  ++P+Y  P PPY A P    +  P+
Sbjct: 780 SQPEQRPAYSQPYPPYGAPPQQPPYGAPS 808


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,509
Number of Sequences: 37544
Number of extensions: 435176
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 13
length of query: 372
length of database: 14,793,348
effective HSP length: 83
effective length of query: 289
effective length of database: 11,677,196
effective search space: 3374709644
effective search space used: 3374709644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)