GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000793-TA|BGIBMGA000793-PA|IPR005578|Hrf1
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)                 103   2e-22
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.87 
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.0  
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)
          Length = 227

 Score =  103 bits (248), Expect = 2e-22
 Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 22/108 (20%)

Query: 107 MAIQYGNQLAAQGKEAVQRE----------------------LHKFVPVSRLRYYFAVDT 144
           MA QYG  +A+QGKE V++                       L +FV +S+L+YYFAVDT
Sbjct: 1   MAFQYGTNVASQGKEYVEKNVIVFSFSNSVEMYLRYSNKWLTLDRFVSISKLKYYFAVDT 60

Query: 145 RYVIRKLMLIVFPYTHKEWMVKYDQDTPVQPRYDINAPDLYIPSMGYV 192
            YV++KL L++FP+THK W V+Y+++ PV PRY++NAPDLYIP  G +
Sbjct: 61  SYVVKKLGLLLFPFTHKNWAVQYNKEEPVAPRYEVNAPDLYIPGKGLI 108


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 108 AIQYGNQLAA-QGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEW 163
           AIQY N+L    G   V+R L + VP  R + + A+ T  V  K  + +  Y   +W
Sbjct: 522 AIQYFNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYIKVYVQMDW 578


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 130  FVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQDTPVQPRYDINAPDLYIPSM 189
            +  VSR +  F       + +   IV     ++  + ++ D      +   APD+YIPS 
Sbjct: 1713 YTDVSRKQKKFVFKVPQFVNQWRRIVVTLDKRKASLYFECDKGESIEFPFKAPDMYIPSA 1772

Query: 190  GYVTYVLLAGFMLG 203
              + Y+  AG+M G
Sbjct: 1773 SGL-YIARAGWMRG 1785


>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 299 LSGSQGPEQPSYGFPNPPYAANPYSDAWDKPT--PGGTKRRVYFLLFVAITQPLLCW 353
           L  + GP      FP  P+  +  SD W +PT  PG     +  ++ V+ T P+L W
Sbjct: 367 LEAAIGPIMELNLFPKKPFGVSAGSDNWLEPTEYPGWGVFLIVVIVLVS-TLPVLIW 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,663
Number of Sequences: 59808
Number of extensions: 468099
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 5
length of query: 372
length of database: 16,821,457
effective HSP length: 83
effective length of query: 289
effective length of database: 11,857,393
effective search space: 3426786577
effective search space used: 3426786577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)