GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000793-TA|BGIBMGA000793-PA|IPR005578|Hrf1
         (372 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   3.4  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    24   7.8  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   7.8  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative
          microtubule binding protein protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 10 PPLVGPSGAIRKAKRVSDVAAMGTPAPNPAFSP 42
          P L  PS    + +R        +PAP P+ +P
Sbjct: 60 PNLFAPSAVSSQLQRPQPTVLAASPAPQPSLAP 92


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 182 PDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQASSALAYII 225
           P L I   G    V +AGF +     FS + +G+Q + A   II
Sbjct: 326 PTLIIAVAGIDDAVSVAGFGIISSIMFSTQSLGLQIAQAPVCII 369


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 160 HKE-WMVKYDQDTPVQPRYDINAPDLYIPSMGYVTYVLLA 198
           HKE W    D   PV  +Y+ ++  + + + G+ T   LA
Sbjct: 523 HKEKWTAISDTGVPVDVKYNSHSQSIGVGANGHRTVYFLA 562


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,124
Number of Sequences: 2123
Number of extensions: 15618
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 372
length of database: 516,269
effective HSP length: 65
effective length of query: 307
effective length of database: 378,274
effective search space: 116130118
effective search space used: 116130118
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)