GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000793-TA|BGIBMGA000793-PA|IPR005578|Hrf1
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59500.1 68416.m06640 integral membrane HRF1 family protein c...    98   7e-21
At1g30890.1 68414.m03779 integral membrane HRF1 family protein c...    96   3e-20
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    30   2.2  
At3g62720.1 68416.m07045 galactosyl transferase GMA12/MNN10 fami...    30   2.9  

>At3g59500.1 68416.m06640 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 111 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 170
           YG ++     E VQ  + ++   S  +YYF V+ +YV  KL +++ P+ H+    +  + 
Sbjct: 42  YGEKIFGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEP 99

Query: 171 TPVQ-----PRYDINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIG-IQASSALAYI 224
              +     P YDINAPDLYIP M + TYV+LAG  LGL  +F+PE +  +     + + 
Sbjct: 100 VGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWF 159

Query: 225 IFEMXXXXXXXXXXXXXXXXKTLDLLAYSGYKYTVMISSLLAGLLAGRTGYYCGLLYSSC 284
           +  M                  LD++AY+GY +T +  ++L  ++ G + YY  + ++  
Sbjct: 160 LQVM--LLKITLLSLGSGEAPLLDIVAYAGYTFTGLCLAVLGKIIWGYS-YYVLIPWTCL 216

Query: 285 ALSYFLVKTLRLQLLSGSQ 303
               FLVKT++  L + S+
Sbjct: 217 CTGVFLVKTMKRVLFAESR 235


>At1g30890.1 68414.m03779 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 111 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 170
           YG ++     E VQ  + ++   S  +YYF V+ +YV  KL +++FP+ H+    +  + 
Sbjct: 42  YGERILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEP 99

Query: 171 TPVQ-----PRYDINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQASSALAYII 225
              +     P YDINAPDLYIP M + TYV+LAG  LGL  +F+PE +       L    
Sbjct: 100 VGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWF 159

Query: 226 FEMXXXXXXXXXXXXXXXXKTLDLLAYSGYKYTVMISSLLAGLLAGRTGYYCGLLYSSCA 285
            ++                  LD++AY GY +  +  +  A ++ G + YY  + ++   
Sbjct: 160 LQV-MLLKVTLLSLGSGEAPLLDIVAYGGYAFAGLCLAGFAKIMWGYS-YYALMPWTCLC 217

Query: 286 LSYFLVKTLRLQLLS 300
              FLVKT++  L +
Sbjct: 218 TGIFLVKTMKRVLFA 232


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 299 LSGSQGPEQPSYGFPNPPYAANPYSDAWDKPTP 331
           LS S  P  P Y    P Y  +P  + +D PTP
Sbjct: 51  LSESPPPPPPQYRRQEPKYTPHPEPNVYDSPTP 83


>At3g62720.1 68416.m07045 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 460

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 292 KTLRLQLLSGSQGPEQPSYGFPNPPYAANPYSDAWDKPTPGGTKRRVYFLLFVAITQP 349
           +T  +  L   +G E+ S    N PY+  P    WD+      K+   F  FVA  +P
Sbjct: 92  ETFDINKLFVDEGDEEKSRDRTNKPYSLGPKISDWDEQRRDWLKQNPSFPNFVAPNKP 149


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,185,344
Number of Sequences: 28952
Number of extensions: 329785
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 7
length of query: 372
length of database: 12,070,560
effective HSP length: 82
effective length of query: 290
effective length of database: 9,696,496
effective search space: 2811983840
effective search space used: 2811983840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)