Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000791-TA|BGIBMGA000791-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding, IPR001849|Pleckstrin-like,
IPR000719|Protein kinase, IPR011009|Protein kinase-like,
IPR008271|Serine/threonine protein kinase, active site,
IPR002290|Serine/threonine protein kinase
         (627 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    47   4e-07
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    29   0.096
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   6.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   6.3  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   8.3  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 46.8 bits (106), Expect = 4e-07
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 454 LVAQILVALKHLHEKNIVHCDLKPENVLLSTDDEFPQVKLCDFGFAR-IIGEKSFRRSVV 512
           +  Q+ + ++HL +  +VH DL   NVL+    E   VK+ DFG +R +  +  + ++  
Sbjct: 597 IARQVALGMEHLAKTRVVHRDLAARNVLVC---ENHTVKVSDFGLSRDVYQDNVYCKNGG 653

Query: 513 G-TPA-YLAPEVLRNKGYNRSLDMWSVGVIIY--VSLSGT 548
           G  P  ++A E L ++ Y    D+WS GV+++  V+L GT
Sbjct: 654 GKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGT 693


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 0.096
 Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 39  VHTYTRPTVCRHCKKLLRGLFKQGLQCRDCHYNAHRKCLPFVPKDCGGEIRDQHGEADSG 98
           VHT  RP  C HC       F    Q +  H   H    PF    C G  R +H      
Sbjct: 212 VHTGERPYGCEHCSM----KFSDSNQLK-AHVLIHTNEKPFECDKCRGRFRRRHHLVHHK 266

Query: 99  T-GSELSETAP 108
             G E +E AP
Sbjct: 267 CGGEEEAERAP 277


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 5   KMGTTVVNKRSKSPSRVVWPL 25
           KMG  + +  +++ S VVWPL
Sbjct: 216 KMGLDIASITAQASSFVVWPL 236


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 5   KMGTTVVNKRSKSPSRVVWPL 25
           KMG  + +  +++ S VVWPL
Sbjct: 216 KMGLDIASITAQASSFVVWPL 236


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
          protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 39 VHTYTRPTVCRHC 51
          VHT  RP  C HC
Sbjct: 59 VHTGERPYGCEHC 71


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,649
Number of Sequences: 317
Number of extensions: 5153
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 9
length of query: 627
length of database: 114,650
effective HSP length: 61
effective length of query: 566
effective length of database: 95,313
effective search space: 53947158
effective search space used: 53947158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)