Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000790-TA|BGIBMGA000790-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding
         (172 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48920.1 68416.m05344 myb family transcription factor (MYB45)...    27   5.2  
At1g63370.1 68414.m07164 flavin-containing monooxygenase family ...    27   6.8  
At1g62620.1 68414.m07065 flavin-containing monooxygenase family ...    27   6.8  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    27   9.0  
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ...    27   9.0  

>At3g48920.1 68416.m05344 myb family transcription factor (MYB45)
           similar to MybHv33 GI:456214 from [Hordeum vulgare];
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 261

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 128 GLVRQGLKCEGALYTYVRPGHRLKRHLFDKKD 159
           GL R G  C      Y+RPG  LK+ LF K++
Sbjct: 51  GLQRNGKSCRLRWVNYLRPG--LKKSLFTKQE 80


>At1g63370.1 68414.m07164 flavin-containing monooxygenase family
           protein / FMO family protein similar to FMO5 from Cavia
           porcellus [SP|P49109]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 450

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 7   FMFQLGVLRDAVSAPAHLLTLAHLKELAVKFVHEKI 42
           F+ + GV RD    P+H   LA+LK+ A +F  E++
Sbjct: 93  FVVRSGVSRDRRRFPSHGEVLAYLKDFAKEFGIEEM 128


>At1g62620.1 68414.m07065 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 3 (FMO3) from Rattus
           norvegicus [GI:12006730], FMO1 from Canis familiaris]
           [GI:15420722], FMO1 from Homo sapiens [SP|Q01740];
           contains Pfam profile: PF00743 Flavin-binding
           monooxygenase-like
          Length = 450

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 7   FMFQLGVLRDAVSAPAHLLTLAHLKELAVKFVHEKI 42
           F+ + GV RD    P+H   LA+LK+ A +F  E++
Sbjct: 93  FVVRSGVSRDPRRFPSHGEVLAYLKDFAKEFGIEEM 128


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 106 HTLAVHSYKAPTFCDFCGEMLFG 128
           H L +  Y+    C FCG  LFG
Sbjct: 69  HPLCLIDYRGSGTCAFCGAFLFG 91


>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 92  ICDVGTESLPLMRPHTLAVHSYKAPTFCDFCGE 124
           IC +   S P   PH L +  + +  +CDFC E
Sbjct: 112 ICTLARLSKP-WHPHLLLMVDFSSDMWCDFCYE 143


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,699
Number of Sequences: 28952
Number of extensions: 163681
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 12,070,560
effective HSP length: 76
effective length of query: 96
effective length of database: 9,870,208
effective search space: 947539968
effective search space used: 947539968
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)