GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000790-TA|BGIBMGA000790-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding
         (172 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    24   0.78 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   1.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.3  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   9.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.6  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 2   EDEVTFMFQLGVLRDAVSAPAHLLTLAHLKELAVKFVHEKIPDNGLNRLADRILLFRHDY 61
           +D+  F+  L  +++A     HLLT+A +  + +   ++ IP  G++   D I L  +D+
Sbjct: 151 KDKENFITLLREIKEAFQPKGHLLTIA-VSAIPIDDAYD-IP--GMSENVDVINLMTYDF 206

Query: 62  CSP 64
             P
Sbjct: 207 HIP 209


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 2   EDEVTFMFQLGVLRDAVSAPAHLLTLA 28
           +D+ TF   L  L+DA +   +LLT+A
Sbjct: 148 QDKATFNRLLQGLKDAFAPKGYLLTVA 174


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 119 CDFCGEMLFGLVRQGLKCEGALYTYVRPGHRLKRHLFDKKD 159
           C  CG+   G       C+G    + R   R ++++   KD
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 119 CDFCGEMLFGLVRQGLKCEGALYTYVRPGHRLKRHLFDKKD 159
           C  CG+   G       C+G    + R   R ++++   KD
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 111 HSYKAPTFCDFCGE 124
           H+ + P  CD CG+
Sbjct: 102 HTDERPYSCDICGK 115


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 119 CDFCGEMLFGLVRQGLKCEG 138
           C  CG+   G     L CEG
Sbjct: 188 CLVCGDRASGYHYNALTCEG 207


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,570
Number of Sequences: 317
Number of extensions: 1716
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 114,650
effective HSP length: 53
effective length of query: 119
effective length of database: 97,849
effective search space: 11644031
effective search space used: 11644031
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)