GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000790-TA|BGIBMGA000790-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    34   0.013
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   8.1  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 33.9 bits (74), Expect = 0.013
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 104 RPHTLAVHSYKAPTFCDFCGEMLFGLVRQGLKCE 137
           R H     S+K PT C +C E+++GL ++G  C+
Sbjct: 396 RFHDFKHVSFKLPTSCSYCREIIWGLSKRGCVCK 429


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 97  TESLPLMRPHTLAVHSYKAPTFCDFCGEMLFGLVRQGLKCEGALYTYVRPGHRLKRHLFD 156
           T   PL   + +  HS KA  F  F G     L+ +  +CE + Y YVR  H +   +F 
Sbjct: 348 TPENPLPTSYQVHSHSMKASEFVPFAG----NLITELFQCEDSKY-YVR--HLVNEEVFP 400

Query: 157 KKD 159
             D
Sbjct: 401 LSD 403


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
          subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 48 NRLADRILLFRHDYCSPNVLQLLNSGTDVVDE 79
          NR A  ++    +  SP + Q+LNS ++ ++E
Sbjct: 30 NRNASHLIKNELEQISPGIRQMLNSNSEFLEE 61


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,132
Number of Sequences: 5004
Number of extensions: 31082
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 3
length of query: 172
length of database: 2,362,478
effective HSP length: 68
effective length of query: 104
effective length of database: 2,022,206
effective search space: 210309424
effective search space used: 210309424
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)