GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000790-TA|BGIBMGA000790-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0535 + 30061862-30063388                                         27   8.1  

>01_06_0535 + 30061862-30063388
          Length = 508

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 58  RHDYCSPNVLQLLNSGTDVVDETLVEIVLTANPLICDVGTESLPLMRP 105
           R  YCS  +L+    G  +  E ++  +L  +PL  +   + LP++ P
Sbjct: 159 RQPYCSYLLLENCMFGRQIEKERIINFLLAPHPLGDEEDIDVLPIIGP 206


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,052,742
Number of Sequences: 37544
Number of extensions: 201879
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 1
length of query: 172
length of database: 14,793,348
effective HSP length: 77
effective length of query: 95
effective length of database: 11,902,460
effective search space: 1130733700
effective search space used: 1130733700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)