Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000789-TA|BGIBMGA000789-PA|undefined
         (95 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   29   0.56 
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      27   3.0  
SB_42096| Best HMM Match : ShTK (HMM E-Value=3.5e-05)                  26   4.0  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                26   5.2  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   25   9.2  
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       25   9.2  
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 16   IICILPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSHARCHDCHDAMI 71
            ++  LP+ GL+ + T  E      +   H  LA C    RR   H RC D  +A++
Sbjct: 1670 VMATLPRDGLSQFGTWCEDYQRMCESYGHRPLA-CGSQYRRYTQHFRCQDVFNALM 1724


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 50   CHPVRRRRPSHARCHDCHDAMIDR 73
            CHP  ++ P H R  D +  M+D+
Sbjct: 1217 CHPPEQKIPKHKRLVDWYKKMLDK 1240


>SB_42096| Best HMM Match : ShTK (HMM E-Value=3.5e-05)
          Length = 64

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 42 MIHSELAGCHPVRRRRPSHARCHDCHD 68
          M    LA   PV R RP+H  C  C D
Sbjct: 1  MASLRLAADAPVSRPRPNHRGCSRCSD 27


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 30   TLLEVCAAYPDIMIHSELAGCHPVRRRRPSHARC 63
            ++LEVC   P      + + C  V +  P H RC
Sbjct: 2981 SVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRC 3014


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 40  DIMIHSELAGCHPVRRRRPSHARCHDCHDAMID 72
           +++I    AG +PV       AR   CH AM D
Sbjct: 196 NLLIMCRYAGPYPVGGHGVRGARTRSCHTAMAD 228


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 11  IGHASIICILPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSH-ARC 63
           IG  S +C    T   +  T  E C  YP + +     GC   +   P+H  RC
Sbjct: 579 IGSHSRVCQANGTWSGTTTTCKEKCERYPSMDVSQCSMGCDVDQDCPPNHMCRC 632


>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 40  DIMIHSELAGCHPVRRRRPS----HARCHDCHDAMIDRVPHINP 79
           D ++H     C P+  + P      A   D H  ++DRV H +P
Sbjct: 227 DQVVHQHPGPCDPICPQHPGLVDQDAGLVDQHPGLVDRVVHQHP 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.139    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,415
Number of Sequences: 59808
Number of extensions: 136894
Number of successful extensions: 337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 8
length of query: 95
length of database: 16,821,457
effective HSP length: 70
effective length of query: 25
effective length of database: 12,634,897
effective search space: 315872425
effective search space used: 315872425
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)