GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000789-TA|BGIBMGA000789-PA|undefined
         (95 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    25   1.5  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    23   6.0  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    23   6.0  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      23   7.9  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 14  ASIICILPKTGLNSYP 29
           A+II ILP+T +NSYP
Sbjct: 279 AAIIGILPQTLINSYP 294


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 9   SPIGHASIICIL----PKTGLNSYPTLLEVCAAY 38
           +PI   S +C L    P+ GLNS   L+E   +Y
Sbjct: 208 TPIVSGSALCALEGREPEIGLNSITKLMEAVDSY 241


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 17/60 (28%), Positives = 21/60 (35%)

Query: 1   MNYADSLASPIGHASIICILPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSH 60
           M Y DS       A  +CI   TG  +Y         +PDI +      C      RP H
Sbjct: 263 MLYVDSKYLTTVKADGLCISTPTGSTAYSLAAGGSLCHPDISVMIVSPICAHSLSLRPIH 322


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 62  RCHDCHDAMIDRVPHINPPW 81
           RC  C   + D+  HIN  W
Sbjct: 317 RCKHCKTPIEDQAVHINNDW 336


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.139    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,817
Number of Sequences: 5004
Number of extensions: 16166
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 2,362,478
effective HSP length: 62
effective length of query: 33
effective length of database: 2,052,230
effective search space: 67723590
effective search space used: 67723590
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)