Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000789-TA|BGIBMGA000789-PA|undefined
(95 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 31 0.18
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 27 2.2
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 27 2.9
06_01_0772 + 5770502-5770619,5771035-5772335 27 2.9
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791 27 2.9
04_01_0527 - 6913266-6913802 27 2.9
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 25 6.7
12_01_0963 + 9608858-9609538 25 8.8
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 25 8.8
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 25 8.8
09_04_0356 - 16925821-16925969,16926056-16926165,16926261-169263... 25 8.8
08_01_0265 + 2148255-2150219,2150735-2150812 25 8.8
08_01_0056 + 379270-379803 25 8.8
03_02_0096 - 5600815-5601348 25 8.8
02_02_0442 - 10318576-10319109 25 8.8
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 7 LASPIGHA-SIICILPKTGL-NSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRP 58
LASP+ H + C LP L +S P L +PD + GC P P
Sbjct: 303 LASPLAHVPASSCPLPAPSLFSSLPLLRATFRVHPDAAAQKAVEGCKPADPHHP 356
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 44 HSELAGCH----PVRRRRPSHARCHDCHDAMIDRVP 75
H+++AGC P R+ RP AR C D +D VP
Sbjct: 164 HADVAGCSTAVSPYRKVRPERARRGMCRD--VDTVP 197
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 29 PTLLEVCAAYPDIMIHSELAGCHPVRRRRPSH 60
PT++++ A + M H++ + HP R R P H
Sbjct: 685 PTIMDIITAVIN-MSHNQKSSSHPPRHRPPLH 715
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 24 GLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSH 60
G +S+ + E A YPDI+ + L+ C P +P +
Sbjct: 251 GSSSF-SFFEQLAGYPDILSYKALSYCLPTDETKPGY 286
>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
Length = 507
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 2 NYADSLASPIGHASIICILPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSHA 61
++ + I A +CI T + + + + AA+P + I S +GCH V H
Sbjct: 221 SFVNESVQNIRDAMALCIGGLTSIVAQDLEVTIRAAHPGVEISSVDSGCHDVLLSSNKHK 280
Query: 62 RCHDCHDAMIDR----VPHINPP 80
D + D + ++N P
Sbjct: 281 SIVHIKDLLGDEERNLIVYVNAP 303
>04_01_0527 - 6913266-6913802
Length = 178
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 34 VCAAYPDIMIHSELAGCHPVRRRRPSHAR 62
+CA I + + L HPVRRRR +H R
Sbjct: 82 LCAKADTIAVSARLG--HPVRRRRRAHRR 108
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 15 SIICILPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSHARCHD 65
SI+C + T S+P L + + ++ G PV +R +H HD
Sbjct: 270 SIMCSIVAT--RSWPELESFFEEWHSLKFFDQMGGIFPVVKRILTHGAVHD 318
>12_01_0963 + 9608858-9609538
Length = 226
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 34 VCAAYPDIMIHSELAGCHPVRRRRPSHAR 62
+CA I + L HPVRRRR +H R
Sbjct: 130 LCAKADTIAASARLG--HPVRRRRRAHRR 156
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 38 YPDIMIHSELAGCHPVRRRRPSHARCHDCHDAMIDRV 74
YPDI + + G H +R H D H+ ++ RV
Sbjct: 30 YPDIRVVEDRRGYHGIRAIE-DHRGYPDIHEGLVMRV 65
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 41 IMIHSELAGCHPVRRRRPSHARC 63
+++H+ + C RR P+ RC
Sbjct: 58 VLVHASMGNCFGGRRPHPNRGRC 80
>09_04_0356 -
16925821-16925969,16926056-16926165,16926261-16926386,
16926485-16926572,16926648-16926768,16926902-16926974,
16927395-16927458,16928019-16928062,16928160-16928218,
16928771-16928870,16929043-16929146
Length = 345
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 50 CHPVRRRRPSHARCHDCHDAM 70
C+PV R + H+RC + DA+
Sbjct: 320 CNPVERLKYVHSRCSEGDDAI 340
>08_01_0265 + 2148255-2150219,2150735-2150812
Length = 680
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 60 HARCHDCHDAMIDRVPHIN 78
H CHDCH +I R N
Sbjct: 647 HRLCHDCHKLLICRGSETN 665
>08_01_0056 + 379270-379803
Length = 177
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 34 VCAAYPDIMIHSELAGCHPVRRRRPSHAR 62
+CA I + L HPVRRRR +H R
Sbjct: 81 LCAKADTIAASARLG--HPVRRRRRAHRR 107
>03_02_0096 - 5600815-5601348
Length = 177
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 34 VCAAYPDIMIHSELAGCHPVRRRRPSHAR 62
+CA I + L HPVRRRR +H R
Sbjct: 81 LCAKADTIAASARLG--HPVRRRRRAHRR 107
>02_02_0442 - 10318576-10319109
Length = 177
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 34 VCAAYPDIMIHSELAGCHPVRRRRPSHAR 62
+CA I + L HPVRRRR +H R
Sbjct: 81 LCAKADTIAASARLG--HPVRRRRRAHRR 107
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.139 0.484
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,426
Number of Sequences: 37544
Number of extensions: 119465
Number of successful extensions: 323
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 15
length of query: 95
length of database: 14,793,348
effective HSP length: 70
effective length of query: 25
effective length of database: 12,165,268
effective search space: 304131700
effective search space used: 304131700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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